BwUniCluster2.0/Software/R/Rgdal - Revision history

K Kuck at 07:53, 18 June 2024

2024-06-18T07:53:49Z

← Older revision		Revision as of 09:53, 18 June 2024
Line 1:		Line 1:

	<span style="color:red"><b>Note that the instructions provided below refer to R 4.2.1 (but not R 4.3.3)! We are currently updating our guides for R 4.3.3.</span>		<span style="color:red"><b>Note that the instructions provided below refer to R 4.2.1 (but not R 4.3.3)! We are currently updating our guides for R 4.3.3.</b></span>

	= General information =		= General information =

K Kuck at 07:49, 18 June 2024

2024-06-18T07:49:35Z

← Older revision		Revision as of 09:49, 18 June 2024
Line 1:		Line 1:

			<span style="color:red"><b>Note that the instructions provided below refer to R 4.2.1 (but not R 4.3.3)! We are currently updating our guides for R 4.3.3.</span>

	= General information =		= General information =

K Kuck at 09:52, 15 February 2024

2024-02-15T09:52:23Z

← Older revision		Revision as of 11:52, 15 February 2024
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	<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-project.org/web/packages/rgeos/index.html]. </span>		<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-project.org/web/packages/rgeos/index.html]. </span>

	Follow the instructions provided under [[bwUniCluster2.0/Software/R/terra]] to install the alternatives terra and sf.		<b>Follow the instructions provided under [[bwUniCluster2.0/Software/R/terra]] to install the alternatives terra and sf.</b>

	<span style="color:red"><b>Installing rgdal and rgeos is, however, still possible using the instructions below.</b></span>		<span style="color:red"><b>Installing rgdal and rgeos is, however, still possible using the instructions below.</b></span>

K Kuck at 09:43, 15 February 2024

2024-02-15T09:43:05Z

← Older revision		Revision as of 11:43, 15 February 2024
Line 3:		Line 3:

	<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-project.org/web/packages/rgeos/index.html]. </span>		<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-project.org/web/packages/rgeos/index.html]. </span>

			Follow the instructions provided under [[bwUniCluster2.0/Software/R/terra]] to install the alternatives terra and sf.

	<span style="color:red"><b>Installing rgdal and rgeos is, however, still possible using the instructions below.</b></span>		<span style="color:red"><b>Installing rgdal and rgeos is, however, still possible using the instructions below.</b></span>

K Kuck at 13:03, 13 February 2024

2024-02-13T13:03:03Z

← Older revision		Revision as of 15:03, 13 February 2024
Line 100:		Line 100:

	<pre>		<pre>

	module load math/R/4.1.2		module load math/R/4.1.2

K Kuck at 13:02, 13 February 2024

2024-02-13T13:02:14Z

← Older revision		Revision as of 15:02, 13 February 2024
Line 93:		Line 93:
	export CFLAGS=-I$HOME/sw/R/include		export CFLAGS=-I$HOME/sw/R/include
	export CXX="icpc -std=c++11"		export CXX="icpc -std=c++11"
			export CXX17=icpc
	</pre>		</pre>


	Now, we install rgdal and rgeos from within R		Now, we install rgdal and rgeos from within R. Note that, since we install a package from a local repository the order of the package installation is relevant. Installing rgdal will fail if sp is not available.

	<pre>		<pre>

	module load math/R/4.1.2		module load math/R/4.1.2

			cd
			wget https://cran.r-project.org/src/contrib/Archive/rgdal/rgdal_1.6-4.tar.gz
			wget https://cran.r-project.org/src/contrib/Archive/rgeos/rgeos_0.6-1.tar.gz

	R -q		R -q
	> install.packages("~~rgdal~~")		> install.packages("sp", repos="https://ftp.gwdg.de/pub/misc/cran/")
	> install.packages("~~rgeos~~")		> install.packages("~/rgdal_1.6-4.tar.gz", repos=NULL, type="source")
			> install.packages("~/rgeos_0.6-1.tar.gz", repos=NULL, type="source")

	> library("rgdal")		> library("rgdal")
	> library("rgeos")		> library("rgeos")

K Kuck at 12:58, 13 February 2024

2024-02-13T12:58:22Z

← Older revision		Revision as of 14:58, 13 February 2024
Line 4:		Line 4:
	<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-project.org/web/packages/rgeos/index.html]. </span>		<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-project.org/web/packages/rgeos/index.html]. </span>

	<span style="color:red"~~><b~~><b>Installing rgdal and rgeos is, however, still possible using the instructions below.</b></span>		<span style="color:red"><b>Installing rgdal and rgeos is, however, still possible using the instructions below.</b></span>

K Kuck at 12:57, 13 February 2024

2024-02-13T12:57:59Z

← Older revision		Revision as of 14:57, 13 February 2024
Line 2:		Line 2:
	= General information =		= General information =

	<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-project.org/web/packages/rgeos/index.html].		<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-project.org/web/packages/rgeos/index.html]. </span>

	<b>Installing rgdal and rgeos is, however, still possible using the instructions below.</b>		<span style="color:red"><b><b>Installing rgdal and rgeos is, however, still possible using the instructions below.</b></span>

	</span>

K Kuck at 12:57, 13 February 2024

2024-02-13T12:57:19Z

← Older revision		Revision as of 14:57, 13 February 2024
Line 2:		Line 2:
	= General information =		= General information =

	<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-project.org/web/packages/rgeos/index.html].~~</span>~~		<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-project.org/web/packages/rgeos/index.html].

			<b>Installing rgdal and rgeos is, however, still possible using the instructions below.</b>
⚫	~~Installation of~~ rgdal and rgeos allows to use the following tools for handling spatial structures in R

			</span>



		⚫	rgdal and rgeos allows to use the following tools for handling spatial structures in R

	* the 'Geospatial' Data Abstraction Library [https://gdal.org/ GDAL]		* the 'Geospatial' Data Abstraction Library [https://gdal.org/ GDAL]

K Kuck at 12:55, 13 February 2024

2024-02-13T12:55:53Z

← Older revision		Revision as of 14:55, 13 February 2024
Line 2:		Line 2:
	= General information =		= General information =

	<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!<b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html] and [ https://cran.r-project.org/web/packages/rgeos/index.html]</span>		<span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-project.org/web/packages/rgeos/index.html].</span>

	Installation of rgdal and rgeos allows to use the following tools for handling spatial structures in R		Installation of rgdal and rgeos allows to use the following tools for handling spatial structures in R