Development/GCC

Description	Content
module load	compiler/gnu/xxx
Availability	bwUniCluster | BwForCluster_Chemistry
License	GPL
Citing	n/a
Links	GNU-Homepage
Graphical Interface	No
Included modules	gcc | g++ | gfortran

The GNU Compiler Collection (GCC) consists of tools to compile C, C++ and Fortran programs:

gcc	GNU C compiler
g++	GNU C++ compiler
gfortran	GNU Fortran compiler

Versions and Availability

A list of versions currently available on all bwHPC-C5-Clusters can be obtained from the

Cluster Information System CIS

{{#widget:Iframe |url=https://cis-hpc.uni-konstanz.de/prod.cis/bwUniCluster/compiler/gnu |width=99% |height=500 |border=0 }} On the command line interface of any bwHPC cluster you'll get a list of available versions by using the command 'module avail chem/gamess'.

$ module avail chem/gamess
------------------------ /opt/bwhpc/common/modulefiles -------------------------
chem/gamess/12052014

Loading

There is a version of GCC available on the system without loading a module but it may be outdated and it is recommended to load the GNU compiler module. To get a list of all the different versions installed on the system execute the following command:

$ module avail compiler/gnu

There is a default version which will be loaded when no version is explicitly specified, so the command

$ module load compiler/gnu

will load the default version.

Documentation

Online documentation

Online Documentation

Local documentation

For version specific documentation see the help page of the module. For example

$ module help compiler/gnu

will show the information for the default version. For detailed lists of the different program options consult the particular man page:

$ man gcc
$ man g++
$ man gfortran

Optimizations

You can turn on various optimization options to enhance the performance of your program. Which options are the best depends on the specific program and can be determined by benchmarking your code. A command which gives good performance and a decent file size is

$ gcc -march=native -O2 ex.c -o ex

There are more aggressive optimization flags but the compiled programs can get quite large and the compilation process will probably take much longer. Moreover it can happen that the so compiled program is even slower. Such a command would be for example

$ gcc -march=native -O3 ex.c -o ex

For a complete list of all the optimization options execute

$ gcc --help=optimizers

Profiling with gprof: Gprof is the profiler which belongs to the gcc compiler. Gprof is also installed on the system and can be used to profile your code. The profiler supports C, C++, Pascal and Fortran 77 program code. With this tool it is possible to analyse call times and time spent within program functions.

The first required step is to compile your program with the profiling flag "-pg".

$ gcc -pg ex.c -o ex

Compiled in this way your program will generate profiling data during execution. By default a file named gmon.out can be found in the work directory after running the program.

$ ./ex

The next step is to run the gprof program to analyse the gmon.out profiling data file. This file contains profiling data concerning the program execution, like an overview, time information or the call graph, in human readable format.

$ gprof gmon.out ex > outputfile.txt