JUSTUS2/Getting Started

General Workflow of Running a Calculation

On a compute cluster, you do not simply run log in and your software, but you write a "job script" that contains all commands to run and process your job and send this into a waiting queue to be run on one of several hundred computers.

How this is done is described in a little more detail here: Running Calculations

Get access to the cluster

Follow the registration process for the bwForCluster. → How to Register for a bwForCluster

Login to the Cluster

Setup service password and 2FA token and login to the cluster. → Login JUSTUS2

Using the Linux Commandline

HPC Wiki (external site) → Introduction to Linux Commandline

Training course → Linux course on training.bwhpc.de

Transfer your data to the cluster

Get familiar with available file systems on the cluster. → File Systems

Transfer your data to the cluster using appropriate tools. → Data Transfer

Find information about installed software and examples

Compiler, Libraries and application software are provided as software modules. Learn how to work with software modules. → Software

Run sample script from a pre-installed software (Software job examples in the page above)

Submit your application as a batch job

Get familiar with available nodes types on the cluster. → Hardware and Architecture

Submit and monitor your jobs with Slurm commands.

• → Running Your Calculations - a very brief introduction.
• → extensive Slurm HOWTO on specific tasks

Acknowledge the cluster

Remember to mention the cluster in your publications. → Acknowledgement