Helix/bwVisu/CryoSPARC: Difference between revisions
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[https://cryosparc.com/ CryoSPARC] is a scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines. |
[https://cryosparc.com/ CryoSPARC] is a scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines. |
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== CryoSPARC License == |
== CryoSPARC License == |
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For starting a CryoSPARC |
For starting a CryoSPARC in bwVisu you need your personal CryoSPARC license ID. To obtain a license ID, go to [https://cryosparc.com/download CryoSPARC] and fill out the form. The licnese ID will be send by e-mail. You only need one licence ID, which you can use every time you start a CryoSPARC job in bwVisu. |
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== CryoSPARC Job == |
== CryoSPARC Job == |
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The CryoSPACE application starts a CryoSPARC master process and a worker process on the allocated compute node. You must request enough time and resources for the work you intend to do within a CryoSPARC session. If the application stops due to the time limit, you can restart the application and continue your pipeline from completed CryoSPARC jobs. |
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== Downloads == |
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When you download results, they are initially saved in your home directory. From there, you can download the results to your system via the file browser in bwVisu. |
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Revision as of 22:51, 5 June 2025
CryoSPARC is a scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines.
CryoSPARC License
For starting a CryoSPARC in bwVisu you need your personal CryoSPARC license ID. To obtain a license ID, go to CryoSPARC and fill out the form. The licnese ID will be send by e-mail. You only need one licence ID, which you can use every time you start a CryoSPARC job in bwVisu.
CryoSPARC Job
The CryoSPACE application starts a CryoSPARC master process and a worker process on the allocated compute node. You must request enough time and resources for the work you intend to do within a CryoSPARC session. If the application stops due to the time limit, you can restart the application and continue your pipeline from completed CryoSPARC jobs.
Note that the CryoSPARC application creates a database in the .cryosparc directory in your home directory the first time it is used. You can only start one CryoSPARC application at a time. Do not attempt to start more than one CryoSPARC application. This could damage your database.
Downloads
When you download results, they are initially saved in your home directory. From there, you can download the results to your system via the file browser in bwVisu.