BwUniCluster2.0/Software/R/Rjags: Difference between revisions
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<pre> |
<pre> |
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# Load the R software module, e.g. |
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module load math/R/3. |
module load math/R/3.6.3 |
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# Check compiler and MKL version (see, requirements) |
# Check compiler and MKL version (see, requirements) |
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# Build JAGS |
# Build JAGS |
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export CFLAGS="-O3 - |
export CFLAGS="-O3 -axCORE-AVX512,CORE-AVX2,AVX -xSSE4.2 -fp-model strict -qopenmp" |
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export CXXFLAGS="-O3 |
export CXXFLAGS="-O3 -std=c++14 -axCORE-AVX512,CORE-AVX2,AVX -xSSE4.2 -fp-model strict -qopenmp" |
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./configure --prefix=$JAGS_HOME --with-blas="-lmkl_rt -lpthread -lm" |
./configure --prefix=$JAGS_HOME --with-blas="-lmkl_rt -lpthread -lm" |
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make -j8 |
make -j8 |
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Revision as of 13:14, 31 March 2021
Installation instructions: JAGS build using Intel Compiler & Intel MKL
Requirements: R, Intel compiler >= 17.0, Intel MKL >= 2017
Consider starting an interactive job for compiling. Copy and paste the following to your shell.
# Load the R software module, e.g.
module load math/R/3.6.3
# Check compiler and MKL version (see, requirements)
module list
# Set up JAGS installation directory
export JAGS_HOME=$HOME/sw/jags
# Prepare JAGS source directory
mkdir -p ~/src
cd ~/src
# Get JAGS
wget https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.0.tar.gz
tar xf JAGS-4.3.0.tar.gz
cd JAGS-4.3.0
# Build JAGS
export CFLAGS="-O3 -axCORE-AVX512,CORE-AVX2,AVX -xSSE4.2 -fp-model strict -qopenmp"
export CXXFLAGS="-O3 -std=c++14 -axCORE-AVX512,CORE-AVX2,AVX -xSSE4.2 -fp-model strict -qopenmp"
./configure --prefix=$JAGS_HOME --with-blas="-lmkl_rt -lpthread -lm"
make -j8
make install
cd
# Set up environment
export PKG_CONFIG_PATH=$JAGS_HOME/lib/pkgconfig
export LD_RUN_PATH=$JAGS_HOME/lib
# Install rjags package from within R session
R -q
install.packages("rjags", configure.args="--enable-rpath")