BwUniCluster2.0/Software/R/Rstan
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Installation instructions
Consider starting an interactive job for compiling. Copy and paste the following to your shell.
Note: Rstan depends on the V8 R package.
# Load the R software module, e.g. module load math/R/3.6.3 # Prepare .R directory (if it does not already exists) mkdir -p ~/.R # Write the following environment variables to Makevars echo "CXX14=icpc" >> ~/.R/Makevars echo "CXX14FLAGS=-O3 -fPIC -std=c++14 -axCORE-AVX512,CORE-AVX2,AVX -xSSE4.2 -fp-model strict -qopenmp" >> ~/.R/Makevars # Set up environment for V8 export DOWNLOAD_STATIC_LIBV8=1 # Install V8 and Rstan packages from within R session R -q install.packages(c("V8","rstan"))
Additional information can be found at: https://github.com/stan-dev/rstan/wiki/Configuring-C-Toolchain-for-Linux