From bwHPC Wiki
Revision as of 13:50, 4 September 2014 by M Neuer (talk | contribs)
Jump to: navigation, search
module load bio/qiime
License GPL
Links Homepage; Documentation
Graphical Interface No
Included in module

1 Description

QIIME is an open source software package for comparison and analysis of microbial communities, primarily based on high-throughput amplicon sequencing data (such as SSU rRNA) generated on a variety of platforms, but also supporting analysis of other types of data (such as shotgun metagenomic data).

2 Versions and Availability

A current list of the versions available on the bwUniCluster and bwForclusters can be obtained from the Cluster Information System: CIS Information on QIIME

On the commandline of the the bwUni or bwFor clusters, you can get a list of the available versions using

$ module avail bio/qiime

3 Loading the module

You can load the default version of QIIME with the command

$ module load bio/qiime

If you wish to load a specific (older) version, you can do so using e.g.

$ module load bio/qiime/0.0.0

to load the version 0.0.0

4 Examples

The examples can be copied to the home directory with

$ cp -r $QIIME_EXA_DIR ~

Please read the Readme file in the examples directory for instructions how to execute them.