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Combined display of all available logs of bwHPC Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).
- 17:37, 16 July 2025 K Kuck talk contribs created page BwUniCluster3.0/Software/R (Created page with "{{Softwarepage|math/R}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | math/R |- | License | GPL |- | Citing | n/a |- | Links | [http://www.r-project.org/ Homepage] | [http://cran.r-project.org/manuals.html Documentation] |- | Graphical Interface | No |- | Plugins | User dependent |} = Description = '''R''' is a free and open-source statistical programming environment based on S, developed at Bell Laboratories (formerly AT&T, now...")
- 10:20, 15 July 2025 K Kuck talk contribs created page BwUniCluster3.0/Software/R/Rjags (Created page with "= General information = rjags is an R interface to use JAGS, [https://mcmc-jags.sourceforge.io/ Just another Gibbs Sampler], a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation = Installation instructions = <code>rjags</code> needs a working JAGS installation. The following instructions will build and install JAGS 4.3.2 to <code>$JAGS_HOME</code> on bwUniCluster 3.0. First, in order to compile them on a compute node,...")
- 15:12, 30 October 2024 K Kuck talk contribs created page BwUniCluster2.0/Software/R/cummeRbund (Created page with "= General information = [https://rspatial.github.io/terra/ '''<code>CummeRbund</code>'''] is an <code>R</code> package designed to aid and simplify the task of analyzing Cufflinks RNA-Seq output. = Installation instructions = == Preparations == Installing <code>CummeRbund</code> involves compiling source code. Therefore, ensure that the following flags are set in <code>$HOME/.R/Makevars</code>: <pre> cat ~/.R/Makevars CXX14=g++ CXX17=g++ CXX14FLAGS += -std=c++14 C...")
- 13:39, 28 October 2024 K Kuck talk contribs created page BwUniCluster2.0/Software/R/terra (R 4.2.1) (Created page with " <span style="color:red"><b>Note that the instructions provided below refer to R 4.2.1 (but not R 4.3.3)! We are currently updating our guides for R 4.3.3.</b></span> = General information = sf and terra allow to use the following tools for handling spatial structures in R * the 'Geospatial' Data Abstraction Library [https://gdal.org/ GDAL] * Projection/transformation operations from the [https://proj.org/ PROJ] library * Interface to the open source Geometry Engin...")
- 13:48, 27 October 2024 K Kuck talk contribs created page BwUniCluster2.0/Software/R/Rgdal (R 4.2.1) (Created page with "<span style="color:red"><b>Note that the instructions provided below refer to R 4.2.1 (but not R 4.4.1)!</b></span> = General information = <span style="color:red"><b>Note that rgdal and rgeos have been retired by their developers in 2023!</b> Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-p...")