JUSTUS2/Software: Difference between revisions

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Required reading to use: [[Environment Modules]]
Required reading to use: [[Environment Modules]]

== Available Software ==

* Web: Visit [https://www.bwhpc.de/software.php https://www.bwhpc.de/software.php], select <code>Cluster → bwForCluster JUSTUS2</code>

* On the cluster: <code>module avail</code>[[Environment_Modules#module_help|(→module avail)]]

* Software in Containers: Instructions for loading software in containers: [[JUSTUS2/Software/Singularity|Singularity]]
* Instructions for using [[JUSTUS2/Software/Python|Python]] on JUSTUS2


== Documentation ==
== Documentation ==
=== Main Documentation on The Cluster ===
Documentation by the cluster operators:
Documentation for environment modules available on the cluster (shown for a chemistry software called "softname"):
{| style="width:100%;"
|- style="background:#deffee;" |
| <code>module help</code> || See section: [[Environment_Modules#module_help]]
|- style="background:#dddddd; " |
| examples in <code>$SOFTNAME_EXA_DIR</code> || See section: [[Environment_Modules#Software_job_examples]]
|- style="background:#deffee; " |
| this wiki || See below
|}


* with command <code>module help chem/softname</code> [[Environment_Modules#module_help|(→module help)]]
== Documentation in the Wiki ==
* examples in <code>$SOFTNAME_EXA_DIR</code> [[Environment_Modules#Software_job_examples|(→job examples)]]
Modules with additional documentation here in the wiki:


==== CAE ====
* comsol
* openfoam
==== chem ====
* abinit
* adf
* ams
* cefine
* censo
* cfour
* cp2k
* crest
* dalton
* dftbplus
* dftd4
* exciting
* fleur
* gamess
* gaussian
* gaussview
* gpaw
* gromacs
* jmol
* kimapi
* lammps
* molden
* molpro
* namd
* nbo
* nw7.3.1
* ocean
* openbabel
* openmolcas
* orca
* plumed
* quantum_espresso
* rasmol
* schrodinger
* siesta
* tmolex
* turbomole
* vasp
* vesta
* vmd
* xtb
* yambo

=== Sometimes Additional Documentation in the Wiki ===
For some environment modules additional documentation is provided here.
<!-- this list could be generated via {{Special:PrefixIndex/JUSTUS2/Software/|stripprefix=yes}}
but then these Pages become orphaned if there is no other link to them
-->
* [[JUSTUS2/Software/ADF|ADF]]
* [[JUSTUS2/Software/ADF|ADF]]


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* [[JUSTUS2/Software/Molden|Molden]]
* [[JUSTUS2/Software/Molden|Molden]]

* [[JUSTUS2/Software/NAMD|NAMD]]

* [[JUSTUS2/Software/Orca|Orca]]

* [[JUSTUS2/Software/Quantum ESPRESSO|Quantum ESPRESSO]]

* [[JUSTUS2/Software/SIESTA|SIESTA]]


* [[JUSTUS2/Software/Schrodinger|Schrodinger]]
* [[JUSTUS2/Software/Schrodinger|Schrodinger]]

* [[JUSTUS2/Software/Turbomole|Turbomole]]


* [[JUSTUS2/Software/VASP|VASP]]
* [[JUSTUS2/Software/VASP|VASP]]

* [[JUSTUS2/Software/Julia|Julia]]

Latest revision as of 17:35, 3 December 2025

Environment Modules

Most software is provided as Modules.

Required reading to use: Environment Modules

Available Software

  • Software in Containers: Instructions for loading software in containers: Singularity
  • Instructions for using Python on JUSTUS2

Documentation

Main Documentation on The Cluster

Documentation for environment modules available on the cluster (shown for a chemistry software called "softname"):

CAE

  • comsol
  • openfoam

chem

  • abinit
  • adf
  • ams
  • cefine
  • censo
  • cfour
  • cp2k
  • crest
  • dalton
  • dftbplus
  • dftd4
  • exciting
  • fleur
  • gamess
  • gaussian
  • gaussview
  • gpaw
  • gromacs
  • jmol
  • kimapi
  • lammps
  • molden
  • molpro
  • namd
  • nbo
  • nw7.3.1
  • ocean
  • openbabel
  • openmolcas
  • orca
  • plumed
  • quantum_espresso
  • rasmol
  • schrodinger
  • siesta
  • tmolex
  • turbomole
  • vasp
  • vesta
  • vmd
  • xtb
  • yambo

Sometimes Additional Documentation in the Wiki

For some environment modules additional documentation is provided here.