BwUniCluster2.0/Software/R/Glmnet: Difference between revisions
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(Created page with "= Installation instructions = Consider starting an interactive job for compiling. Copy and paste the following to your shell. <pre> # Load the R software module, e.g. module...") |
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# Run a quick test |
# Run a quick test |
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> library(glmnet) |
> library(glmnet) |
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> data(QuickStartExample) |
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> x <- QuickStartExample$x |
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> y <- QuickStartExample$y |
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> fit <- glmnet(x, y) |
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> print(fit) |
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</pre> |
</pre> |
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Revision as of 19:11, 18 November 2021
Installation instructions
Consider starting an interactive job for compiling. Copy and paste the following to your shell.
# Load the R software module, e.g.
module load math/R/4.1.2
# Prepare .R directory (if it does not already exists)
mkdir -p ~/.R
# Write the following environment variables to Makevars
echo "CXX14=icpc" >> ~/.R/Makevars
echo "CXX14FLAGS=-O3 -fPIC -std=c++14 -axCORE-AVX512,CORE-AVX2,AVX -xSSE4.2 -fp-model strict -qopenmp" >> ~/.R/Makevars
# Install the glmnet package from within R session
R -q
> install.packages("glmnet", dependencies=TRUE)
# Run a quick test
> library(glmnet)
> data(QuickStartExample)
> x <- QuickStartExample$x
> y <- QuickStartExample$y
> fit <- glmnet(x, y)
> print(fit)