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Combined display of all available logs of bwHPC Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 10:24, 6 June 2023 H Winkhardt talk contribs deleted page Devel/GCC (content before blanking was: "#REDIRECT Development/GCC")
• 10:24, 6 June 2023 H Winkhardt talk contribs deleted page General compiler usage (content before blanking was: "#REDIRECT Development/General compiler usage")
• 10:24, 6 June 2023 H Winkhardt talk contribs deleted page BwHPC BPG for Parallel Programming (content before blanking was: "#REDIRECT Development/Parallel Programming")
• 10:23, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage NFS (content before blanking was: "<H1>Using NFS</H1> NFS protocol supported KIT intern for project storage. '''Example (NFS mount)''' <pre> mount -o nfsver=3 os.lsdf.kit.edu:/lsdf01/lsdf/inst/projects /mnt/mountpoint </pre> '''Example (/etc/fstab)'''...")
• 10:23, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage Quota (content before blanking was: "<H1> Quota settings</H1> <H2> LSDF User Storage</H2> Dafaul User qouta (per user) : soft limit = 100GB, hard limit = 400GB A user can query his user quota on the login cluster: <pre> >ssh loginname@os-login.lsdf.kit....")
• 10:23, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage rdata (content before blanking was: "<H1> Access to the Filesystem LSDF Online Storage from HPC-Cluster</H1> Users of the filesystem LSDF Online Storage can furthermore transfer data to '''bwUniCluster''' and '''ForHLR''' via the tool '''rdata'''. Therefor...")
• 10:23, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage Filesystem (content before blanking was: "Some of the characteristics of the file systems are shown in Table. '''LSDF User Storage''' {| style="width:100%; vertical-align:top; background:#f5fffa;border:1px solid #000000;padding:1px" |- style="width:20%;height=20...")
• 10:23, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage Login Cluster (content before blanking was: "'''Cluster name:''' os-login.lsdf.kit.edu<br> ('''IPs:'''141.52.212.82, 141.52.212.83, 141.52.212.84) <br> '''Monitoring:'''<br> [http://lsdfmon.scc.kit.edu/ganglia/?c=Server&h=lsdf-41-190-dis.lsdf.kit.edu&m=load_one&r=ho...")
• 10:23, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage Backup (content before blanking was: "There are regular backups of all data of the LSDF Online Storage directories. <hr> <br> <br> <br> <br> Backup")
• 10:23, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage Snapshots (content before blanking was: "Snapshots are used to create a point-in-time copy of a file system or file sets. Snapshots can be used to quickly restore files or folders that were unintentionally deleted. Snapshots also provide a form of file versionin...")
• 10:23, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage RoboMirror (content before blanking was: "RoboMirror's aim is to provide a very simple and user-centered GUI for Robocopy to allow for easy synchronization of two directory trees, e.g., to perform a robust incremental backup across the network (e.g., to LSDF Onli...")
• 10:23, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage rsync (content before blanking was: "<H1>Using rsync from UNIX client via the login-cluster</H1> '''rsync''' is a fast and extraordinarily versatile file copying tool. It can copy locally, to/from another host over any remote shell, or to/from a remote '''...")
• 10:23, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage lftp (content before blanking was: "<H1>Using lftp from UNIX client</H1> '''lftp''' is a command-line file transfer program (FTP client) for UNIX and Unix-like systems. Besides FTP, it also supports HTTP, HTTPS and '''SFTP''' etc. In addition to feature...")
• 10:23, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage SSHFS (content before blanking was: "<H1>Using SSHFS for UNIX Client</H1> <H2>Installation</H2> In most linux distributions you could install a package for fuse mounting a network drive. ''''Example (debian/ubuntu):''' <br> <pre> > apt-get install sshfs <...")
• 10:22, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage CIFS (content before blanking was: "<H1> Using SMB/CIFS for UNIX client (only KIT intern or KIT-VPN)</H1> <H2>SMB Client</H2> '''Attention:''' To access data served by LSDF_Online_Storage via '''smbclient''', You need a '''''Service Password'''''. Please...")
• 10:22, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage SSH (content before blanking was: "<H1>Using SSH from Unix client</H1> '''Access login cluster:''' os-login.lsdf.kit.edu '''Example:''' <pre> >ssh -p 22 xy1234@os-login.lsdf.kit.edu </pre> Access per ssh key: '''Example:''' <pre> >ssh-keygen -b 2048 -t...")
• 10:22, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage SFTP (content before blanking was: "<H1>Using SFTP from Unix client</H1> '''Example:''' <pre> > sftp xy1234@os-login.lsdf.kit.edu Connecting to os-login.lsdf.kit.edu<br> xy1234@os-login.lsdf.kit.edu's password: sftp> ls snapshots temp test sftp> help .....")
• 10:22, 6 June 2023 H Winkhardt talk contribs deleted page LSDF Online Storage SCP (content before blanking was: "<H1>Using SCP from Unix client</H1> This section describes how a user can connect to a LSDF environment while using the SCP protocol. Prerequisite is that a SCP client is available (installed) and working. To copy data...")
• 10:22, 6 June 2023 H Winkhardt talk contribs deleted page Tecplot (content before blanking was: "{| width=600px class="wikitable" |- ! Description !! Content |- | module load | vis/tecplot |- | Availability | bwUniCluster |- | License | KIT-License |- | Citing | n/a |- | Links | [http://www.tecplot.com Tecplot H...")
• 10:22, 6 June 2023 H Winkhardt talk contribs deleted page Resource Managers (content before blanking was: "== TORQUE Resource Manager == The '''T'''erascale '''O'''pen-source '''R'''esource and '''QUE'''ue Manager ([http://www.adaptivecomputing.com/products/open-source/torque/ TORQUE]) is a distributed resource manager providi...")
• 10:22, 6 June 2023 H Winkhardt talk contribs deleted page Text editors (content before blanking was: "Text editors are used to edit files and scripts on bwHPC clusters. Some of them are with GUI and some of them are not. == Without GUI == * vim * nano == With GUI == Note that using GUI application require SSH login wi...")
• 10:22, 6 June 2023 H Winkhardt talk contribs deleted page Relion (content before blanking was: "{{Softwarepage|bio/relion}} {| width=760px class="wikitable" |- ! Description !! Content |- | module load | bio/relion |- | License | [http://static.fsf.org/nosvn/directory/fdl-1.3-standalone.html GNU Free Documentation...")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page Batch Jobs - quick guide (content before blanking was: "All calculations can be only executed as a '''batch job''' which is a scripted sequence of commands together with required run time, number of CPU cores and required memory size. Batch jobs are to be submitted to the comp...")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page BwForCluster MLS&WISO Development SuperQuickStart (content before blanking was: "'''Either...''' * get an account and login * use the default gcc compiler and openmpi: module load gcc module load openmpi * compile your stuff, e.g.: cd ~/work mpicc ... ./myprog.c * choose the queue: ** devel 2h...")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page BwForCluster MLS&WISO Development Batch Jobs (content before blanking was: "= Introduction = To allow the use of the computational resources by several users, the resources are split spatially (=number of nodes) and temporally in items that are called jobs. Each job can request exclusive usage of...")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page BwForCluster MLS&WISO Development Software Modules (content before blanking was: "= Introduction = Compilation and running of parallel programs often require certain environmental variables to be set, such that programs (PATH), shared libraries (LD_LIBRARY_PATH) and man pages (MANPATH) can be found. A...")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page BwForCluster MLS&WISO Development Contact (content before blanking was: "For assistance regarding access to and usage of the bwForCluster MLS&WISO Development, please send an e-mail to [mailto:bwfor-support@iwr.uni-heidelberg.de bwfordev-support]. [[Category:bwForCluster_MLS&WISO_Development]...")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page BwForCluster MLS&WISO Development Login (content before blanking was: "= Login = After Registration, the bwfordev can be accessed via Secure Shell (SSH). Only SSH is allowed for login. From linux machines, you can log in using the following command: <code> ssh...")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page BwForCluster MLS&WISO Development Filesystems (content before blanking was: "= File Systems = There is a storage systems for $HOME. Additionally, each compute node provides high-speed temporary storage on the node-local solid state disk on /tmp. {| class="wikitable" |- !style="width:25%" | !sty...")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page BwForCluster MLS&WISO Development Acknowledgement (content before blanking was: "When preparing a publication describing work that involved the usage of a bwForCluster, e.g. the bwForCluster MLS&WISO (Development), please ensure that you reference the bwHPC initiative, the bwHPC-C5 project and – if...")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page Trinity (content before blanking was: "not available until now... stay tuned...")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page Performance Reports (content before blanking was: "{| width=600px class="wikitable" |- ! Description !! Content |- | module load | devel/reports/5.0.1 |- | Availability | bwUniCluster | BwForCluster_Chemistry |- | License | Floating or server locked licences...")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page SAS (content before blanking was: "{| width=760px class="wikitable" |- ! Description !! Content |- | module load | math/sas |- | Availability | bwForCluster_MLS&WISO_Production |- | License | Commercial. |- | Citing | n/a |- | Links | [http://www.sas....")
• 10:21, 6 June 2023 H Winkhardt talk contribs deleted page CummeRbund (R-package) (content before blanking was: "{| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/r_cummerbund (R-plugin only) |- | License | Artistic-2.0 |- |Citing | Citing infos... |- | Links | [http://bioconductor.org/...")
• 10:20, 6 June 2023 H Winkhardt talk contribs deleted page RAxML (content before blanking was: "{{Softwarepage|bio/raxml}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/raxml |- | License | [http://www.gnu.org/copyleft/gpl.html GPLv3] |- |Citing | RAxML | raxmlGUI |- | Li...")
• 10:20, 6 June 2023 H Winkhardt talk contribs deleted page MrBayes (content before blanking was: "{| width=760px class="wikitable" |- ! Description !! Content |- | module load | bio/mrbayes |- | License | Free Software |- |Citing | n./a. |- | Links | [http://mrbayes.sourceforge.net/index.php MrBayes Homepage] |...")
• 10:20, 6 June 2023 H Winkhardt talk contribs deleted page Integrative-Genomics-Viewer (content before blanking was: "{{Softwarepage|bio/igv}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/igv |- | License | [https://github.com/igvteam/igv/blob/master/license.txt MIT License] |- | Citing | <small><...")
• 10:20, 6 June 2023 H Winkhardt talk contribs deleted page GATK (content before blanking was: "{{Softwarepage|bio/gatk}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/gatk |- | License | Mixed licensing mode: [https://www.broadinstitute.org/gatk/about/license.html Free for ac...")
• 10:20, 6 June 2023 H Winkhardt talk contribs deleted page Smalt (content before blanking was: "{| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/smalt |- | Availability | bwUniCluster |- | License | [http://www.gnu.org/copyleft/gpl.html GPLv3] |- | Citing | <small>SMALT is Cop...")
• 10:20, 6 June 2023 H Winkhardt talk contribs deleted page FastQ screen (content before blanking was: "{{Softwarepage|bio/fastq_screen}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/fastq_screen |- | License | [http://www.gnu.org/copyleft/gpl.html GPLV3] |- |Citing | n./a. |- | Link...")
• 10:20, 6 June 2023 H Winkhardt talk contribs deleted page Burrows Wheeler Aligner (content before blanking was: "{| width=1200px class="wikitable" |- ! Description !! Content |- | module load | bio/bwa (Burrows Wheeler Aligner) |- | License | [http://www.gnu.org/copyleft/gpl.html GPLV3], MIT License |- |Citing | #Citing|Citing in...")
• 10:20, 6 June 2023 H Winkhardt talk contribs deleted page FastQC (content before blanking was: "{{Softwarepage|bio/fastqc}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/fastqc |- | License | [http://www.gnu.org/copyleft/gpl.html GPLv3] |- |Citing | n./a. |- | Links | [https:/...")
• 10:20, 6 June 2023 H Winkhardt talk contribs deleted page FastQT (content before blanking was: "{| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/fastqc |- | Availability | bwUniCluster |- | License | [http://www.gnu.org/copyleft/gpl.html GPLv3] |- |Citing | n./a. |- | Links |...")
• 10:19, 6 June 2023 H Winkhardt talk contribs deleted page BwForCluster MLS&WISO Production Acknowledgement (content before blanking was: "When preparing a publication describing work that involved the usage of a bwForCluster, e.g. the bwForCluster MLS&WISO (Production), please ensure that you reference the bwHPC initiative, the bwHPC-S5 project and – if a...")
• 10:19, 6 June 2023 H Winkhardt talk contribs deleted page MAP (content before blanking was: "{{Softwarepage|devel/ddt}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | devel/ddt |- | License | Floating or server locked licences for developers and users. | [http://www.allinea....")
• 10:19, 6 June 2023 H Winkhardt talk contribs deleted page IMa2p (content before blanking was: "{| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/ima2p |- | Availability | bwUniCluster |- | License | [https://github.com/arunsethuraman/ima2p/blob/master/COPYING GNU GENERAL PUBLIC...")
• 10:19, 6 June 2023 H Winkhardt talk contribs deleted page Berkeleygw (content before blanking was: "{| width=600px class="wikitable" |- ! Description !! Content |- | module load | chem/berkeleygw |- | Availability | BwForCluster_Chemistry |- | License | BerkeleyGW, Copyright (c) |- | Citing | [http://w...")
• 10:19, 6 June 2023 H Winkhardt talk contribs deleted page Omnet (content before blanking was: "{{Softwarepage|cae/omnet}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | cae/omnet |- | License | [https://omnetpp.org/doc/omnetpp/manual/usman.html#sec101 OMNeT++ is free only for acade...")
• 10:19, 6 June 2023 H Winkhardt talk contribs deleted page Fastsimcoal (content before blanking was: "{| width=700px class="wikitable" |- ! Description !! Content |- | module load | bio/fastsimcoal |- | License | Freely available |- | Citing |<small><small> fastsimcoal2 and fsc22:<br> Excoffier, L., Dupanloup, I., Huerta-...")
• 10:19, 6 June 2023 H Winkhardt talk contribs deleted page Amber (content before blanking was: "#REDIRECT Software Modules")