Difference between revisions of "GNU Scientific Library (GSL)"
(Redirected page to GSL) (Tag: New redirect) |
|||
| (7 intermediate revisions by one other user not shown) | |||
| Line 1: | Line 1: | ||
| + | #REDIRECT[[GSL]] |
||
| − | {| width=600px class="wikitable" |
||
| − | |- |
||
| − | ! Description !! Content |
||
| − | |- |
||
| − | | module load |
||
| − | | numlib/gsl |
||
| − | |- |
||
| − | | Availability |
||
| − | | [[bwUniCluster]] | [[BwForCluster_Chemistry]] |
||
| − | |- |
||
| − | | License |
||
| − | | |
||
| − | |- |
||
| − | |Citing |
||
| − | | |
||
| − | |- |
||
| − | | Links |
||
| − | | |
||
| − | |- |
||
| − | | Graphical Interface |
||
| − | | No |
||
| − | |- |
||
| − | |} |
||
| − | <br> |
||
| − | = Description = |
||
| − | The '''GNU Scientific Library''' (or '''GSL''') is a software library for numerical computations in applied mathematics and science. The GSL is written in the C programming language, but bindings exist for other languages as well. |
||
| − | <br> |
||
| − | <br> |
||
| − | = Versions and Availability = |
||
| − | A list of versions currently available on the bwForCluster Chemistry can be obtained from the |
||
| − | <br><big> |
||
| − | [https://cis-hpc.uni-konstanz.de/prod.cis/ Cluster Information System CIS] </big> |
||
| − | {{#widget:Iframe |
||
| − | |url=https://cis-hpc.uni-konstanz.de/prod.cis/bwUniCluster/numlib/gsl |
||
| − | |width=99% |
||
| − | |height=250 |
||
| − | |border=0 |
||
| − | }} |
||
| − | <br> |
||
| − | Show a list of available versions using 'module avail numlib/gsl' on any HPC-C5 cluster. |
||
| − | <pre> |
||
| − | : EXAMPLE bwUniCluster |
||
| − | $ module avail numlib/gsl |
||
| − | ------------------------ /opt/bwhpc/common/modulefiles ------------------------- |
||
| − | numlib/gsl/1.16-gnu-4.4 numlib/gsl/1.16-intel-14.0 |
||
| − | numlib/gsl/1.16-intel-13.1(default) |
||
| − | </pre> |
||
| − | <br> |
||
| − | = Documentation = |
||
| − | === Online === |
||
| − | [http://www.gnu.org/software/gsl/ Online-Documentation] |
||
| − | === Local === |
||
| − | * info gsl |
||
| − | * man gsl |
||
| − | * man gsl-config |
||
| − | <br> |
||
| − | = Tips for compiling and linking = |
||
| − | == Loading the module == |
||
| − | You can load the default version of the GSL library with the command<br> |
||
| − | 'module load numlib/gsl'. |
||
| − | <br> |
||
| − | The module will try to load modules it needs to function. |
||
| − | If loading the module fails, check if you have already loaded one of those modules with the command 'module list'. |
||
| − | <br> |
||
| − | If you wish to load a specific (older) version (if available), you can do so using e.g. |
||
| − | ' module load numlib/gsl/'version' to load the version you desires. |
||
| − | <pre> |
||
| − | $ module avail numlib/gsl |
||
| − | ------------------------ /opt/bwhpc/common/modulefiles ------------------------- |
||
| − | numlib/gsl/1.16-gnu-4.4 numlib/gsl/1.16-intel-14.0 |
||
| − | numlib/gsl/1.16-intel-13.1(default) |
||
| − | $ module load numlib/gsl/1.16-gnu-4.4 |
||
| − | $ module list |
||
| − | Currently Loaded Modulefiles: |
||
| − | 1) numlib/gsl/1.16-gnu-4.4 |
||
| − | </pre> |
||
| − | <br> |
||
| − | = GSL-Specific Environments = |
||
| − | To see a list of all GSL environments set by the 'module load'-command use 'env | grep GSL'. |
||
| − | <br> |
||
| − | Or use the command 'module display numlib/gsl'. |
||
| − | <pre> |
||
| − | $ module show numlib/gsl------------------------------------------------------------------- |
||
| − | /opt/bwhpc/common/modulefiles/numlib/gsl/1.16-intel-13.1: |
||
| − | GSL_VERSION = 1.16 |
||
| − | GSL_HOME = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1 |
||
| − | GSL_BIN_DIR = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/bin |
||
| − | GSL_INC_DIR = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/include |
||
| − | GSL_LIB_DIR = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/lib |
||
| − | GSL_STA_DIR = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/lib |
||
| − | GSL_SHA_DIR = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/lib |
||
| − | GSL_MAN_DIR = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/share/man |
||
| − | GSL_INF_DIR = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/share/info |
||
| − | GSL_DOC_DIR = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/share/doc |
||
| − | GSL_EXA_DIR = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/share/doc/examples |
||
| − | GSL_WWW http://www.gnu.org/software/gsl/ |
||
| − | PATH = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/bin:$PATH |
||
| − | MANPATH = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/share/man:$MANPATH |
||
| − | INFOPATH = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/share/info:$INFOPATH |
||
| − | LD_LIBRARY_PATH = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/lib:$LD_LIBRARY_PATH |
||
| − | INCLUDE = /opt/bwhpc/common/numlib/gsl/1.16-intel-13.1/include:$INCLUDE |
||
| − | [...] |
||
| − | </pre> |
||
| − | <br> |
||
| − | = How To Use the Library = |
||
| − | == Includes == |
||
| − | Your source code should contain preprocessor include statements with a gsl/ prefix, such as |
||
| − | <pre> #include <gsl/gsl_math.h></pre> |
||
| − | == Compile == |
||
| − | A typical compilation command for a source file example.c with the |
||
| − | Intel C compiler icc is |
||
| − | <pre> $ icc -Wall -I$GSL_INC_DIR -c example.c </pre> |
||
| − | The [[#GSL-Specific Environments|$GSL_INC_DIR environment variable] points to location of |
||
| − | the include path for the gsl header files. |
||
| − | <br> |
||
| − | == Link == |
||
| − | The following command can be used to link the application with the gsl libraries. |
||
| − | <pre> $ icc -L$GSL_LIB_DIR -o example example.o -lgsl -lgslcblas -lm </pre> |
||
| − | The [[[#GSL-Specific Environments||$GSL_LIB_DIR environment] variable points to the location |
||
| − | of the gsl libraries. |
||
| − | <br> |
||
| − | Also make sure to have the GSL-module loaded before running applications build |
||
| − | with this library. |
||
| − | <br><br> |
||
| − | = Example C-Source Code = |
||
| − | == Create source code file 'intro.c' == |
||
| − | <source lang="c"> |
||
| − | #include <stdio.h> |
||
| − | #include <gsl/gsl_sf_bessel.h> |
||
| − | |||
| − | int main (void) |
||
| − | { |
||
| − | double x = 5.0; |
||
| − | double y = gsl_sf_bessel_J0 (x); |
||
| − | printf ("J0(%g) = %.18e\n", x, y); |
||
| − | return 0; |
||
| − | } |
||
| − | </source> |
||
| − | == Compile and Link == |
||
| − | Load the gsl module for the Intel compiler, compile, link and run the program |
||
| − | <pre> |
||
| − | $ module load numlib/gsl/1.16-intel-13.1 |
||
| − | Loading module dependency 'compiler/intel/13.1'. |
||
| − | $ icc -Wall -I$GSL_INC_DIR -c intro.c |
||
| − | $ icc -L$GSL_LIB_DIR -o intro intro.o -lgsl -lgslcblas -lm |
||
| − | $ ./intro |
||
| − | J0(5) = -1.775967713143382642e-01 |
||
| − | </pre> |
||
| − | |||
| − | [[Category: Numerical libraries]][[Category:bwUniCluster]] |
||
Latest revision as of 22:25, 4 February 2022
Redirect to:
