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18:05, 24 June 2025 F Bartusch talk contribs created page BinAC2/Migrate BinAC 1 workspaces to BinAC 2 workspaces (Created page with " __TOC__ = Preamble = == Remove unnecessary data == Now is a good possibility getting rid of unnecessary data. Don't migrate data to BinAC 2 that you know...")
12:19, 24 June 2025 F Bartusch talk contribs created page BinAC2/Migrate Moab to Slurm jobs (Created page with "== BinAC 1 Queues -> BinAC 2 Slurm partitions == BinAC 2 uses Slurm scheduler instead of Moab/Torque. Please refer to the BinAC 2 Slurm paritions page for an overview of available Slurm partitions. == Moab/Torque flags -> Slurm flags == Replace Moab/Torque job specification flags in your job scripts by their corresponding Slurm counterparts. '''Commonly used Moab job specification flags and their Slurm equivalents''' {| width=750px class=...")
11:40, 24 June 2025 F Bartusch talk contribs created page Registration/bwForCluster/BinAC2 (Add BinAC 2 registration page)
17:05, 7 May 2025 F Bartusch talk contribs created page BinAC2/Software/Jupyterlab (Created page with "{{Softwarepage|devel/jupyterlab}} {| width=700px class="wikitable" |- ! Description !! Content |- | module load | devel/jupyterlab |- | License | [https://github.com/jupyterlab/jupyterlab/blob/main/LICENSE JupyterLab License] |- | Links | [https://jupyter.org/ Homepage] |- | Graphical Interface | Yes |} = Description = JupyterLab is a web-based interactive development environment for notebooks, code, and data. Currently, BinAC 2 provides the following [https://ju...")
15:54, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab ssh tunnel linux.png
15:54, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab ssh tunnel linux.png
15:54, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab new kernel.png
15:54, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab new kernel.png
15:53, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab mobaxterm.png
15:53, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab mobaxterm.png
15:53, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab link.png
15:53, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab link.png
15:53, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab connection details.png
15:53, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab connection details.png
15:53, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab browser url.png
15:53, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab browser url.png
15:52, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab browser shutdown.png
15:52, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab browser shutdown.png
15:52, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab browser lab.png
15:52, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab browser lab.png
16:32, 23 April 2025 F Bartusch talk contribs created page BinAC/Software/Cellranger (Created page with "{{Softwarepage|bio/cellranger}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/cellranger |- | License | [https://github.com/10XGenomics/cellranger/blob/main/LICENSE Cell Ranger License] |- | Citing | [https://www.10xgenomics.com/support/software/cell-ranger/latest/miscellaneous/cr-citations How to cite Cell Ranger] |- | Links | [https://www.10xgenomics.com/support/software/cell-ranger/latest Cell Ranger Homepage] | [https://www...")
17:20, 16 April 2025 F Bartusch talk contribs created page BinAC2/Software/Nextflow (Created page with "= Description = Nextflow is a scientific workflow system primarily used for bioinformatics data analysis. This documentation also introduces nf-core, a community-driven initiative that maintains a curated collection of analysis pipelines built with Nextflow. The documentation in the bwHPC Wiki serves as a getting-started guide for installing and using both Nextflow and nf-core pipelines on the bwForCluster BinAC 2. Additionally, [https://nf-co.re/pipelines/ the nf-cor...")
17:45, 3 December 2024 F Bartusch talk contribs created page BinAC2/SLURM Partitions (Create stub)
14:34, 3 December 2024 F Bartusch talk contribs created page BinAC2/Slurm (Copy&Paste of the bwUniCluster Slurm page.)
11:28, 3 December 2024 F Bartusch talk contribs created page BinAC2/Software (Begin BinAC 2 software page)
10:51, 6 November 2024 F Bartusch talk contribs created page BinAC2/Getting Started (Copy and Paste getting started from BinAC to BinAC2)
18:04, 31 October 2024 F Bartusch talk contribs created page BinAC2/Login (Created page with "{|style="background:#deffee; width:100%;" |style="padding:5px; background:#cef2e0; text-align:left"| center|25px |style="padding:5px; background:#cef2e0; text-align:left"| Access to bwForCluster BinAC 2 is only possible from IP addresses within the [https://www.belwue.de BelWü] network which connects universities and other scientific institutions in Baden-Württemberg. If your computer is in your University network (e.g. at your office), you shou...")
15:40, 28 October 2024 F Bartusch talk contribs created page BinAC/Software/Conda (Created page with "{| style="height:100%; background:#ffeaef; width:100%" | style="padding:2px; background:#f5dfdf; font-size:100%; font-weight:bold; text-align:left" | '''Caution''' |- | The licensing situation with Anaconda is currently unclear. To be on the safe side, make sure to not use the '''defaults''' channel |} = Use Conda Environments on BinAC = [https://conda.io/docs/index.html Conda] can be used to easily install software (usually Python packages) in dedicated environme...")
16:32, 16 September 2024 F Bartusch talk contribs uploaded File:BinAC2 Logo RGB subtitel.svg
16:32, 16 September 2024 F Bartusch talk contribs created page File:BinAC2 Logo RGB subtitel.svg
14:38, 9 August 2024 F Bartusch talk contribs created page BinAC/Software/Nextflow (Created page with "= Description = = Usage =")
14:55, 26 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab link.png
14:55, 26 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab link.png
11:09, 26 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab mobaxterm.png
11:09, 26 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab mobaxterm.png
10:48, 26 July 2024 F Bartusch talk contribs uploaded a new version of File:Binac jupyterlab new kernel.png
10:45, 26 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab new kernel.png
10:45, 26 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab new kernel.png
17:18, 25 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab browser shutdown.png
17:18, 25 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab browser shutdown.png
17:12, 25 July 2024 F Bartusch talk contribs uploaded a new version of File:Binac jupyterlab browser url.png
17:09, 25 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab browser lab.png
17:09, 25 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab browser lab.png
17:09, 25 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab browser url.png
17:09, 25 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab browser url.png
16:46, 25 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab ssh tunnel linux.png
16:46, 25 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab ssh tunnel linux.png
15:57, 25 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab connection details.png
15:57, 25 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab connection details.png
11:10, 25 July 2024 F Bartusch talk contribs created page BinAC/Software/Jupyterlab (Created page with "{| width=700px class="wikitable" |- ! Description !! Content |- | module load | bio/jupyterlab |- | License | [https://github.com/jupyterlab/jupyterlab/blob/main/LICENSE Jupyterlab License] |- | Links | [https://jupyter.org/ Homepage] |- | Graphical Interface | Yes |} = Description = JupyterLab is a web-based interactive development environment for notebooks, code, and data. The module provides a jobscript for starting a Jupyterlab instance on the BinAC interactive...")

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