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09:16, 17 September 2025 F Bartusch talk contribs created page BinAC2/Project Data Organization (Created page with "= Data Organization on BinAC 2 project directories = This guide explains how to organize and manage your data in the project directory at <code>/pfs/10/project</code> BinAC 2. Each project has its own dedicated directory with flexible permission systems to help you control access to your files and collaborate effectively with team members. '''Important''' Use workspaces for actual computations. Data in workspaces are stored on '''much''' faster storage! == Project Di...")
18:02, 20 August 2025 F Bartusch talk contribs moved page BinAC/Software/AMDock to BinAC2/Software/AMDock without leaving a redirect (Aus Versehen im BinAC 1 Baum angelegt ...)
17:48, 20 August 2025 F Bartusch talk contribs uploaded File:Binac2-amdock.png
17:48, 20 August 2025 F Bartusch talk contribs created page File:Binac2-amdock.png
16:30, 20 August 2025 F Bartusch talk contribs uploaded File:Binac2-tigervnc-xfce-xterm.png
16:30, 20 August 2025 F Bartusch talk contribs created page File:Binac2-tigervnc-xfce-xterm.png
16:29, 20 August 2025 F Bartusch talk contribs uploaded File:Binac2-tigervnc-xfce.png
16:29, 20 August 2025 F Bartusch talk contribs created page File:Binac2-tigervnc-xfce.png
17:22, 19 August 2025 F Bartusch talk contribs created page BinAC/Software/AMDock (Created page with "stub")
15:15, 19 August 2025 F Bartusch talk contribs created page BinAC2/Software/TigerVNC (Created page with "stub")
18:05, 24 June 2025 F Bartusch talk contribs created page BinAC2/Migrate BinAC 1 workspaces to BinAC 2 workspaces (Created page with " __TOC__ = Preamble = == Remove unnecessary data == Now is a good possibility getting rid of unnecessary data. Don't migrate data to BinAC 2 that you know...")
12:19, 24 June 2025 F Bartusch talk contribs created page BinAC2/Migrate Moab to Slurm jobs (Created page with "== BinAC 1 Queues -> BinAC 2 Slurm partitions == BinAC 2 uses Slurm scheduler instead of Moab/Torque. Please refer to the BinAC 2 Slurm paritions page for an overview of available Slurm partitions. == Moab/Torque flags -> Slurm flags == Replace Moab/Torque job specification flags in your job scripts by their corresponding Slurm counterparts. '''Commonly used Moab job specification flags and their Slurm equivalents''' {| width=750px class=...")
11:40, 24 June 2025 F Bartusch talk contribs created page Registration/bwForCluster/BinAC2 (Add BinAC 2 registration page)
17:05, 7 May 2025 F Bartusch talk contribs created page BinAC2/Software/Jupyterlab (Created page with "{{Softwarepage|devel/jupyterlab}} {| width=700px class="wikitable" |- ! Description !! Content |- | module load | devel/jupyterlab |- | License | [https://github.com/jupyterlab/jupyterlab/blob/main/LICENSE JupyterLab License] |- | Links | [https://jupyter.org/ Homepage] |- | Graphical Interface | Yes |} = Description = JupyterLab is a web-based interactive development environment for notebooks, code, and data. Currently, BinAC 2 provides the following [https://ju...")
15:54, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab ssh tunnel linux.png
15:54, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab ssh tunnel linux.png
15:54, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab new kernel.png
15:54, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab new kernel.png
15:53, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab mobaxterm.png
15:53, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab mobaxterm.png
15:53, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab link.png
15:53, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab link.png
15:53, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab connection details.png
15:53, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab connection details.png
15:53, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab browser url.png
15:53, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab browser url.png
15:52, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab browser shutdown.png
15:52, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab browser shutdown.png
15:52, 7 May 2025 F Bartusch talk contribs uploaded File:Binac2 jupyterlab browser lab.png
15:52, 7 May 2025 F Bartusch talk contribs created page File:Binac2 jupyterlab browser lab.png
16:32, 23 April 2025 F Bartusch talk contribs created page BinAC/Software/Cellranger (Created page with "{{Softwarepage|bio/cellranger}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/cellranger |- | License | [https://github.com/10XGenomics/cellranger/blob/main/LICENSE Cell Ranger License] |- | Citing | [https://www.10xgenomics.com/support/software/cell-ranger/latest/miscellaneous/cr-citations How to cite Cell Ranger] |- | Links | [https://www.10xgenomics.com/support/software/cell-ranger/latest Cell Ranger Homepage] | [https://www...")
17:20, 16 April 2025 F Bartusch talk contribs created page BinAC2/Software/Nextflow (Created page with "= Description = Nextflow is a scientific workflow system primarily used for bioinformatics data analysis. This documentation also introduces nf-core, a community-driven initiative that maintains a curated collection of analysis pipelines built with Nextflow. The documentation in the bwHPC Wiki serves as a getting-started guide for installing and using both Nextflow and nf-core pipelines on the bwForCluster BinAC 2. Additionally, [https://nf-co.re/pipelines/ the nf-cor...")
17:45, 3 December 2024 F Bartusch talk contribs created page BinAC2/SLURM Partitions (Create stub)
14:34, 3 December 2024 F Bartusch talk contribs created page BinAC2/Slurm (Copy&Paste of the bwUniCluster Slurm page.)
11:28, 3 December 2024 F Bartusch talk contribs created page BinAC2/Software (Begin BinAC 2 software page)
10:51, 6 November 2024 F Bartusch talk contribs created page BinAC2/Getting Started (Copy and Paste getting started from BinAC to BinAC2)
18:04, 31 October 2024 F Bartusch talk contribs created page BinAC2/Login (Created page with "{|style="background:#deffee; width:100%;" |style="padding:5px; background:#cef2e0; text-align:left"| center|25px |style="padding:5px; background:#cef2e0; text-align:left"| Access to bwForCluster BinAC 2 is only possible from IP addresses within the [https://www.belwue.de BelWü] network which connects universities and other scientific institutions in Baden-Württemberg. If your computer is in your University network (e.g. at your office), you shou...")
15:40, 28 October 2024 F Bartusch talk contribs created page BinAC/Software/Conda (Created page with "{| style="height:100%; background:#ffeaef; width:100%" | style="padding:2px; background:#f5dfdf; font-size:100%; font-weight:bold; text-align:left" | '''Caution''' |- | The licensing situation with Anaconda is currently unclear. To be on the safe side, make sure to not use the '''defaults''' channel |} = Use Conda Environments on BinAC = [https://conda.io/docs/index.html Conda] can be used to easily install software (usually Python packages) in dedicated environme...")
16:32, 16 September 2024 F Bartusch talk contribs uploaded File:BinAC2 Logo RGB subtitel.svg
16:32, 16 September 2024 F Bartusch talk contribs created page File:BinAC2 Logo RGB subtitel.svg
14:38, 9 August 2024 F Bartusch talk contribs created page BinAC/Software/Nextflow (Created page with "= Description = = Usage =")
14:55, 26 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab link.png
14:55, 26 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab link.png
11:09, 26 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab mobaxterm.png
11:09, 26 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab mobaxterm.png
10:48, 26 July 2024 F Bartusch talk contribs uploaded a new version of File:Binac jupyterlab new kernel.png
10:45, 26 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab new kernel.png
10:45, 26 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab new kernel.png
17:18, 25 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab browser shutdown.png
17:18, 25 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab browser shutdown.png

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