User contributions for F Bartusch

26 June 2025

• 14:1214:12, 26 June 2025 diff hist +2‎ m Development/Conda ‎No edit summary current
• 12:5512:55, 26 June 2025 diff hist +5‎ m BinAC2 ‎No edit summary current
• 11:2211:22, 26 June 2025 diff hist +4‎ BinAC2/Hardware and Architecture ‎No edit summary
• 11:2211:22, 26 June 2025 diff hist +25‎ BinAC2/Hardware and Architecture ‎No edit summary

24 June 2025

• 18:4818:48, 24 June 2025 diff hist +82‎ BinAC2/SLURM Partitions ‎No edit summary current
• 18:4418:44, 24 June 2025 diff hist +443‎ BinAC2/Hardware and Architecture ‎ add H200 specs
• 18:0518:05, 24 June 2025 diff hist +5,232‎ N BinAC2/Migrate BinAC 1 workspaces to BinAC 2 workspaces ‎ Created page with "<!-- {|style="background:#ffa833; width:100%;" |style="padding:5px; background:##ffa833; text-align:left"| center|25px |style="padding:5px; background:#ffa833; text-align:left"| BinAC 2 workspaces are currently limited to 5 TB per workspace. Larger workspaces should be split up first. |} --> __TOC__ = Preamble = == Remove unnecessary data == Now is a good possibility getting rid of unnecessary data. Don't migrate data to BinAC 2 that you know..." current
• 12:4512:45, 24 June 2025 diff hist +5‎ m BinAC2/Hardware and Architecture ‎No edit summary
• 12:4512:45, 24 June 2025 diff hist −13‎ m BinAC2 ‎No edit summary
• 12:2012:20, 24 June 2025 diff hist +613‎ BinAC2 ‎No edit summary
• 12:1912:19, 24 June 2025 diff hist +6,040‎ N BinAC2/Migrate Moab to Slurm jobs ‎ Created page with "== BinAC 1 Queues -> BinAC 2 Slurm partitions == BinAC 2 uses Slurm scheduler instead of Moab/Torque. Please refer to the BinAC 2 Slurm paritions page for an overview of available Slurm partitions. == Moab/Torque flags -> Slurm flags == Replace Moab/Torque job specification flags in your job scripts by their corresponding Slurm counterparts. '''Commonly used Moab job specification flags and their Slurm equivalents''' {| width=750px class=..."
• 12:1312:13, 24 June 2025 diff hist −5‎ m BinAC2/SLURM Partitions ‎No edit summary
• 11:4011:40, 24 June 2025 diff hist +3,901‎ N Registration/bwForCluster/BinAC2 ‎ Add BinAC 2 registration page current
• 11:2911:29, 24 June 2025 diff hist +83‎ Registration/bwForCluster/Service ‎ Added BinAC 2 and marked BinAC 1 as legecy

17 June 2025

• 10:2510:25, 17 June 2025 diff hist +53‎ BinAC2 ‎No edit summary
• 10:0410:04, 17 June 2025 diff hist +26‎ BinAC2 ‎No edit summary

16 May 2025

• 15:2415:24, 16 May 2025 diff hist +2‎ BinAC2/Software/Nextflow ‎ →‎nf-core Pipelines current

9 May 2025

• 15:2715:27, 9 May 2025 diff hist +8‎ BinAC2/Hardware and Architecture ‎No edit summary
• 12:3212:32, 9 May 2025 diff hist +805‎ BinAC2/Hardware and Architecture ‎No edit summary

7 May 2025

• 17:3317:33, 7 May 2025 diff hist +179‎ Main Page ‎No edit summary
• 17:1117:11, 7 May 2025 diff hist +337‎ BinAC2/Software/Jupyterlab ‎No edit summary current
• 17:0517:05, 7 May 2025 diff hist +9,674‎ N BinAC2/Software/Jupyterlab ‎ Created page with "{{Softwarepage|devel/jupyterlab}} {| width=700px class="wikitable" |- ! Description !! Content |- | module load | devel/jupyterlab |- | License | [https://github.com/jupyterlab/jupyterlab/blob/main/LICENSE JupyterLab License] |- | Links | [https://jupyter.org/ Homepage] |- | Graphical Interface | Yes |} = Description = JupyterLab is a web-based interactive development environment for notebooks, code, and data. Currently, BinAC 2 provides the following [https://ju..."
• 15:5415:54, 7 May 2025 diff hist 0‎ N File:Binac2 jupyterlab ssh tunnel linux.png ‎No edit summary current
• 15:5415:54, 7 May 2025 diff hist 0‎ N File:Binac2 jupyterlab new kernel.png ‎No edit summary current
• 15:5315:53, 7 May 2025 diff hist 0‎ N File:Binac2 jupyterlab mobaxterm.png ‎No edit summary current
• 15:5315:53, 7 May 2025 diff hist 0‎ N File:Binac2 jupyterlab link.png ‎No edit summary current
• 15:5315:53, 7 May 2025 diff hist 0‎ N File:Binac2 jupyterlab connection details.png ‎No edit summary current
• 15:5315:53, 7 May 2025 diff hist 0‎ N File:Binac2 jupyterlab browser url.png ‎No edit summary current
• 15:5215:52, 7 May 2025 diff hist 0‎ N File:Binac2 jupyterlab browser shutdown.png ‎No edit summary current
• 15:5215:52, 7 May 2025 diff hist 0‎ N File:Binac2 jupyterlab browser lab.png ‎No edit summary current

6 May 2025

• 16:2516:25, 6 May 2025 diff hist +2‎ m BinAC2/Software ‎No edit summary current
• 16:2416:24, 6 May 2025 diff hist −10‎ BinAC2/Software ‎No edit summary

29 April 2025

• 11:1711:17, 29 April 2025 diff hist +412‎ BinAC2/Login ‎No edit summary current

23 April 2025

• 16:3216:32, 23 April 2025 diff hist +1,788‎ N BinAC/Software/Cellranger ‎ Created page with "{{Softwarepage|bio/cellranger}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/cellranger |- | License | [https://github.com/10XGenomics/cellranger/blob/main/LICENSE Cell Ranger License] |- | Citing | [https://www.10xgenomics.com/support/software/cell-ranger/latest/miscellaneous/cr-citations How to cite Cell Ranger] |- | Links | [https://www.10xgenomics.com/support/software/cell-ranger/latest Cell Ranger Homepage] | [https://www..." current
• 15:1315:13, 23 April 2025 diff hist +46‎ BinAC2/Software ‎ →‎Documentation in the Wiki

16 April 2025

• 17:2017:20, 16 April 2025 diff hist +8,336‎ N BinAC2/Software/Nextflow ‎ Created page with "= Description = Nextflow is a scientific workflow system primarily used for bioinformatics data analysis. This documentation also introduces nf-core, a community-driven initiative that maintains a curated collection of analysis pipelines built with Nextflow. The documentation in the bwHPC Wiki serves as a getting-started guide for installing and using both Nextflow and nf-core pipelines on the bwForCluster BinAC 2. Additionally, [https://nf-co.re/pipelines/ the nf-cor..."

13 February 2025

• 11:1411:14, 13 February 2025 diff hist −1,097‎ BinAC2/Getting Started ‎ →‎Software
• 11:0811:08, 13 February 2025 diff hist −938‎ BinAC2/Getting Started ‎ →‎Batch System Basics
• 10:2410:24, 13 February 2025 diff hist +455‎ BinAC2/Getting Started ‎ →‎Temporary Data
• 10:1110:11, 13 February 2025 diff hist −1,733‎ BinAC2/Getting Started ‎ →‎Work File System
• 09:4309:43, 13 February 2025 diff hist +1,322‎ BinAC2/Getting Started ‎ Correct BinAC 2 Getting Started guide.

4 February 2025

• 11:2711:27, 4 February 2025 diff hist −2‎ BinAC/Quickstart Guide ‎ →‎How to share data with coworkers?

3 February 2025

• 14:4714:47, 3 February 2025 diff hist +370‎ BinAC/Moab ‎ →‎qsub -q queues
• 13:0013:00, 3 February 2025 diff hist −189‎ BinAC/Moab ‎ →‎List your jobs and show job details : qstat
• 12:5812:58, 3 February 2025 diff hist −1,579‎ BinAC/Moab ‎ →‎Moab Job Control : mjobctl
• 12:5812:58, 3 February 2025 diff hist −334‎ BinAC/Moab ‎ →‎Canceling own jobs : canceljob
• 12:5312:53, 3 February 2025 diff hist −4,297‎ BinAC/Moab ‎ →‎Blocked job information : checkjob -v
• 12:5312:53, 3 February 2025 diff hist −14,353‎ BinAC/Moab ‎ →‎Detailed job information : checkjob
• 12:5312:53, 3 February 2025 diff hist −2,828‎ BinAC/Moab ‎ →‎List of your submitted jobs : showq
• 12:4712:47, 3 February 2025 diff hist −4,060‎ BinAC/Moab ‎ →‎Shows free resources : showbf