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18:04, 31 October 2024 F Bartusch talk contribs created page BinAC2/Login (Created page with "{|style="background:#deffee; width:100%;" |style="padding:5px; background:#cef2e0; text-align:left"| center|25px |style="padding:5px; background:#cef2e0; text-align:left"| Access to bwForCluster BinAC 2 is only possible from IP addresses within the [https://www.belwue.de BelWü] network which connects universities and other scientific institutions in Baden-Württemberg. If your computer is in your University network (e.g. at your office), you shou...")
15:12, 30 October 2024 K Kuck talk contribs created page BwUniCluster2.0/Software/R/cummeRbund (Created page with "= General information = [https://rspatial.github.io/terra/ '''<code>CummeRbund</code>'''] is an <code>R</code> package designed to aid and simplify the task of analyzing Cufflinks RNA-Seq output. = Installation instructions = == Preparations == Installing <code>CummeRbund</code> involves compiling source code. Therefore, ensure that the following flags are set in <code>$HOME/.R/Makevars</code>: <pre> cat ~/.R/Makevars CXX14=g++ CXX17=g++ CXX14FLAGS += -std=c++14 C...")
15:40, 28 October 2024 F Bartusch talk contribs created page BinAC/Software/Conda (Created page with "{| style="height:100%; background:#ffeaef; width:100%" | style="padding:2px; background:#f5dfdf; font-size:100%; font-weight:bold; text-align:left" | '''Caution''' |- | The licensing situation with Anaconda is currently unclear. To be on the safe side, make sure to not use the '''defaults''' channel |} = Use Conda Environments on BinAC = [https://conda.io/docs/index.html Conda] can be used to easily install software (usually Python packages) in dedicated environme...")
13:39, 28 October 2024 K Kuck talk contribs created page BwUniCluster2.0/Software/R/terra (R 4.2.1) (Created page with " Note that the instructions provided below refer to R 4.2.1 (but not R 4.3.3)! We are currently updating our guides for R 4.3.3. = General information = sf and terra allow to use the following tools for handling spatial structures in R * the 'Geospatial' Data Abstraction Library [https://gdal.org/ GDAL] * Projection/transformation operations from the [https://proj.org/ PROJ] library * Interface to the open source Geometry Engin...")
12:54, 28 October 2024 R Keller talk contribs created page DACHS/Registration (Created page with "= Registration bwUniCluster = The DACHS is the high performance computing (HPC) for Data Analysis of Universities of Applied Science in Baden-Württemberg. It is co-financed by the Ministry of Science, Research and the Arts Baden-Württemberg and the shareholders: * HS Aalen * HS Albstadt-Sigmaringen * HS Esslingen * HS Heilbronn * HS Karlsruhe * HTWG Konstanz * HS Mannheim * HS Offenburg * HS Reutlingen * HfT Stuttgart * TH Ulm All members of the shareholder unive...")
12:33, 28 October 2024 R Keller talk contribs created page DACHS/Getting Started (Getting started)
13:48, 27 October 2024 K Kuck talk contribs created page BwUniCluster2.0/Software/R/Rgdal (R 4.2.1) (Created page with "Note that the instructions provided below refer to R 4.2.1 (but not R 4.4.1)! = General information = Note that rgdal and rgeos have been retired by their developers in 2023! Please find further information at [https://cran.r-project.org/web/packages/rgdal/index.html https://cran.r-project.org/web/packages/rgdal/index.html] and [https://cran.r-project.org/web/packages/rgeos/index.html https://cran.r-p...")
09:48, 17 October 2024 User account M Kunzelmann talk contribs was created by R Barthel talk contribs and password was sent by email
17:45, 9 October 2024 R Keller talk contribs created page DACHS/Hardware and Architecture (1st Version)
15:25, 9 October 2024 R Keller talk contribs created page File:DACHS Logo.png (DACHS Logo)
15:25, 9 October 2024 R Keller talk contribs uploaded File:DACHS Logo.png (DACHS Logo)
14:48, 9 October 2024 R Keller talk contribs created page DACHS (Entry page for the Datenanalyse Cluster der Hochschulen (DACHS))
17:39, 8 October 2024 M Carmesin talk contribs created page JUSTUS2/Software/Julia/Parallel Programming (Created page with "= Parallel Programming in Julia = Julia supports several paradigms of parallel programming # Implicit multi-threading by math libraries (OpenBLAS, MKL) # Explicit multi-threading using Julia threads (e.g. `Threads.@threads for`) # Multiple processes on one ore more nodes * `Distributed` package and `SlurmManager` from [`ClusterManagers.jl`](https://github.com/JuliaParallel/ClusterManagers.jl) package, `@distributed for`-loops * [`MPI.jl`](https://github.com/JuliaParall...")
16:42, 8 October 2024 K Siegmund talk contribs moved page When (not to) use a HPC Cluster to When (not) to use a HPC Cluster (typo)
16:41, 8 October 2024 K Siegmund talk contribs created page When (not to) use a HPC Cluster (Created page with "My calculations take a long time - should I try using one of the bwHPC clusters for my tasks? == Misconception: "everything will be faster" == right|thumb|alt=bwUniCluster2.0 |upright=1| many compute cores: every "tray" in these racks contains 1-4 computers, every computer typically has 50-200 compute cores The performance of a single compute core is not higher than that of your typical desktop computer. The main things...")
14:36, 8 October 2024 K Siegmund talk contribs created page .bashrc Do's and Don'ts (Created page with ".bashrc and .profiles are files that are sourced when you log in. You can add commands that you want to run every time by adding lines to these files, but you can also make mistakes that make your life or the life of the cluster teams harder. == Donts's == * don't forget to test your changes before you log out * don't put <code> module load </code> commands in .bashrc, modules may make changes that break the default system environment * don't put LD_PRELOAD or LIBRARY...")
13:34, 8 October 2024 M Carmesin talk contribs created page JUSTUS2/Software/Julia (Created page with "{{Softwarepage|math/julia}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | math/julia |- | Availability | bwUniCluster | JUSTUS2 |- | License | MIT License |- |Citing | [https://github.com/JuliaLang/julia/blob/master/CITATION.bib] |- | Links | [https://julialang.org/ Project homepage] | [https://docs.julialang.org/en/v1/ Documentation]n] |- | Graphical Interface | No |}")
11:13, 8 October 2024 User account M Carmesin talk contribs was created by H Winkhardt talk contribs and password was sent by email
08:38, 30 September 2024 User account M Quandt talk contribs was created by R Barthel talk contribs and password was sent by email
08:36, 30 September 2024 User account S Behnle talk contribs was created by R Barthel talk contribs and password was sent by email
16:32, 16 September 2024 F Bartusch talk contribs created page File:BinAC2 Logo RGB subtitel.svg
16:32, 16 September 2024 F Bartusch talk contribs uploaded File:BinAC2 Logo RGB subtitel.svg
11:51, 11 September 2024 K Siegmund talk contribs deleted page Batch Jobs Moab (obsolete)
11:51, 11 September 2024 K Siegmund talk contribs deleted page Talk:Batch Jobs Moab (obsolete)
14:38, 9 August 2024 F Bartusch talk contribs created page BinAC/Software/Nextflow (Created page with "= Description = = Usage =")
14:55, 26 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab link.png
14:55, 26 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab link.png
11:09, 26 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab mobaxterm.png
11:09, 26 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab mobaxterm.png
10:48, 26 July 2024 F Bartusch talk contribs uploaded a new version of File:Binac jupyterlab new kernel.png
10:45, 26 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab new kernel.png
10:45, 26 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab new kernel.png
17:18, 25 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab browser shutdown.png
17:18, 25 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab browser shutdown.png
17:12, 25 July 2024 F Bartusch talk contribs uploaded a new version of File:Binac jupyterlab browser url.png
17:09, 25 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab browser lab.png
17:09, 25 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab browser lab.png
17:09, 25 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab browser url.png
17:09, 25 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab browser url.png
16:46, 25 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab ssh tunnel linux.png
16:46, 25 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab ssh tunnel linux.png
15:57, 25 July 2024 F Bartusch talk contribs created page File:Binac jupyterlab connection details.png
15:57, 25 July 2024 F Bartusch talk contribs uploaded File:Binac jupyterlab connection details.png
11:10, 25 July 2024 F Bartusch talk contribs created page BinAC/Software/Jupyterlab (Created page with "{| width=700px class="wikitable" |- ! Description !! Content |- | module load | bio/jupyterlab |- | License | [https://github.com/jupyterlab/jupyterlab/blob/main/LICENSE Jupyterlab License] |- | Links | [https://jupyter.org/ Homepage] |- | Graphical Interface | Yes |} = Description = JupyterLab is a web-based interactive development environment for notebooks, code, and data. The module provides a jobscript for starting a Jupyterlab instance on the BinAC interactive...")
10:14, 18 June 2024 K Siegmund talk contribs deleted page Category:Feedback (content was: "#REDIRECT Feedback", and the only contributor was "M Janczyk" (talk))
09:24, 7 June 2024 User account P Hematty talk contribs was created by H Winkhardt talk contribs and password was sent by email
08:25, 5 June 2024 User account H Schumacher talk contribs was created by R Barthel talk contribs and password was sent by email
12:18, 29 May 2024 K Siegmund talk contribs deleted page Category:BwUniCluster (content before blanking was: "#REDIRECT Category:BwUniCluster_2.0")
12:17, 29 May 2024 K Siegmund talk contribs deleted page Category:BwHPC News (content was: " Further news and announcements ca...", and the only contributor was "R Barthel" (talk))
10:39, 21 May 2024 K Siegmund talk contribs deleted page Category:Visualization (content was: "This category contains all Best Practice Guides on visualization related software installed on bwHPC clusters. This category contains software that is installed in the category '''vis''' of the software module syste...")

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