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- Software Module System - Lmod This guide provides a general overview and introduction to the software system management via Lmod on JUSTUS 2 for new users as well as for experienced us24 KB (3,388 words) - 10:07, 23 April 2024
- Software on the bwHPC Clusters is provided as '''Software Environment Modules''', or short '''Modules'''. Modules make it possible to have different versions of a software installed at a the same time.9 KB (1,254 words) - 10:24, 25 March 2024
- ...odes are connected by a fast InfiniBand interconnect. In addition the file system parallel file system.26 KB (4,273 words) - 12:04, 27 February 2024
- ...hort '''Modules''' are the means by which most of the installed scientific software is provided on bwUniCluster 2.0. ...lity to load and unload complete environments for compilers, libraries and software packages by a single command.24 KB (2,897 words) - 02:12, 8 October 2022
- The bwUniCluster system was '''unavailable''' between '''October 17, 2016''' and '''October 21, 201 ...your source code after the maintenance due to operating system as well as software and libraries upgrade. This does also apply to binaries that may7 KB (968 words) - 23:41, 7 October 2022
- = File System Basics = == Home File System ==12 KB (1,902 words) - 15:24, 16 April 2024
- If you only have a mobile device, you can use software-based solutions as a second factor. If you don't want to use a smartphone a ...ion, which allows them to generate One-Time Passwords and log into the HPC system without your knowledge.17 KB (2,779 words) - 11:18, 30 January 2024
- '''Gaussian''' is a general purpose ''quantum chemistry'' software package for ''ab initio'' electronic structure calculations. It provides: ...Gaussian input file. The '''number of cores''' requested from the queueing system (i.e. ''--ntasks-per-node=N'') '''must''' be identical to '''%NProcShared=N9 KB (1,385 words) - 10:00, 23 April 2024
- ...fault-tolerant, and highly scalable cluster management and job scheduling system for large and small Linux clusters. Slurm requires no kernel modifications ...any job submission by the user is to be executed by commands of the Slurm software. Slurm queues and runs user jobs based on fair sharing policies.39 KB (5,731 words) - 10:46, 2 May 2024
- == System Architecture == === Operating System and Software ===14 KB (2,115 words) - 15:00, 22 June 2023
- == Running an Example with Preinstalled Software == * scientific software: read on how to load [[Software Modules]]3 KB (529 words) - 13:08, 26 April 2024
- ...anding page that also gives more information about the currently installed software versions. ...Select the organization (e.g. KIT) that has granted you access to the HPC system and press Continue. In the Login section that appears, enter your username17 KB (2,540 words) - 11:29, 23 April 2024
- == System Architecture == === Operating System and Software ===7 KB (1,012 words) - 17:46, 11 December 2023
- With the maintenance the host key of the system has changed. Most SSH clients warn about this change or refuse to connect. = Operating system =5 KB (707 words) - 12:49, 7 October 2022
- = System Architecture = ...eir home and working directories (darker blue) stored in the parallel file system [[Lustre]].8 KB (1,247 words) - 14:45, 16 April 2024
- ...ept for Kernel components (e.g. drivers). This also means that you can use software that isn't available for RHEL/CentOS, but is offered for other Linux system For example, a user may build a software package from a library or from source on their own computer, move it to the11 KB (1,671 words) - 11:45, 23 April 2024
- mention if there is more than one software in the module, i.e. icc, ifort and debugger --> ...ftware does and should enable potential new users to decide if this is the software that might help them with their project.8 KB (1,122 words) - 13:10, 25 August 2022
- == Software setup == ...ording to your need via the [[BwUniCluster_2.0_Software|'''Software Module System''']].2 KB (335 words) - 16:28, 8 January 2024
- ...mplifies and unifies management across one or multiple hardware, operating system, storage, network, license and resource manager environments. ...e any job submission by the user is to be executed by commands of the MOAB software. MOAB queues and runs user jobs based on fair sharing policies.49 KB (7,178 words) - 16:21, 28 June 2023
- == System Architecture == == Operating System and Software ==5 KB (620 words) - 13:22, 16 October 2023
- There are two types of [[batch system]]s currently used on bwHPC clusters, called "Moab" (legacy installs) and "S ...software via "module avail" on the cluster or also at https://www.bwhpc.de/software.html).4 KB (574 words) - 18:56, 8 January 2024
- ...ar, with the account information that your home institution submits to the system. * Create at least two separate tokens: '''FIRST''' set up a software/hardware TOTP token. '''THEN''' create and print a "backup TAN list". Never12 KB (1,862 words) - 19:09, 17 November 2023
- ...by a regular user, as Slurm prevents regular users from accessing critical system information and viewing job and usage information of other users. # Load software modules as needed, e.g.46 KB (6,912 words) - 17:34, 2 December 2022
- : The software that distributes the [[#Compute_Job|compute jobs]] of the users on the avai ;Batch System6 KB (868 words) - 14:29, 6 February 2024
- == System Architecture == === Operating System and Software ===2 KB (229 words) - 11:32, 29 April 2024
- ...com/adf-modeling-suite/ ADF Modeling Suite] by [https://www.scm.com/ SCM] (Software for Chemistry & Materials) is a collection of programs for modeling chemica ...be saved as a ''run''-file which is suitable for inclusion in our queueing system scripts. For details see the [https://www.scm.com/doc/Tutorials/Introductio6 KB (891 words) - 11:30, 23 April 2024
- {{Softwarepage|system/singularity}} | system/singularity3 KB (427 words) - 13:11, 21 April 2023
- * Usage of [[BinAC/Software|Software]] on BinAC ...available Software Modules see [https://www.bwhpc.de/software.php bwhpc.de Software Search] (select bwForCluster BinAC)2 KB (224 words) - 15:15, 17 January 2024
- ...e a warning or if you want to check that you are connecting to the correct system, you can verify the key hashes using the following list: = Operating system =2 KB (291 words) - 12:50, 7 October 2022
- ...within the bwHPC framework. The bwUniCluster 2.0 replaces the predecessor system [https://www.scc.kit.edu/dienste/bwUniCluster.php bwUniCluster] and also in The modern bwUniCluster 2.0 system consists of more than 840 SMP nodes with 64-bit Intel Xeon processors. It p6 KB (615 words) - 15:37, 3 April 2024
- ...e a warning or if you want to check that you are connecting to the correct system, you can verify the key hashes using the following list: ...1e.scc.kit.edu) have been taken out of service due to ongoing hardware and software issues and low utilisation. It is still possible to generate code for the B4 KB (610 words) - 12:49, 7 October 2022
- Here we list important changes on bwForCluster Helix compared to the previous system bwForCluster MLS&WISO. == Software Modules ==2 KB (272 words) - 13:52, 25 August 2023
- == Find information about installed software and examples == ...rovided as software modules. Learn how to work with software modules. -> [[Software Modules]]1 KB (143 words) - 14:58, 22 June 2023
- == Find information about installed software and examples == ...rovided as software modules. Learn how to work with software modules. -> [[Software Modules]]1 KB (151 words) - 00:42, 10 November 2022
- * Usage of [[NEMO/Software|Software]] on NEMO ...available Software Modules see [https://www.bwhpc.de/software.php bwhpc.de Software Search] (select bwForCluster NEMO)2 KB (274 words) - 17:17, 24 April 2024
- ...e a warning or if you want to check that you are connecting to the correct system, you can verify the key hashes using the following list: = Operating system =2 KB (326 words) - 14:39, 24 March 2023
- '''Turbomole''' is a general purpose ''quantum chemistry'' software package for ''ab initio'' electronic structure calculations and provides: https://www.bwhpc.de/software.php9 KB (1,247 words) - 11:31, 23 April 2024
- ''Virtual Network Computing (VNC)'' is a graphical desktop sharing system. performance, highly scalable software rasterizer for OpenGL can carry4 KB (678 words) - 02:58, 8 October 2022
- ...are most likely not on a network from which access to the bwUniCluster 2.0 system is allowed. Please check if you might have to establish a VPN connection fi '''Issue: The system asks for the One-Time Password multiple times'''2 KB (287 words) - 18:57, 8 September 2022
- ...e a warning or if you want to check that you are connecting to the correct system, you can verify the key hashes using the following list: = Operating system =2 KB (237 words) - 16:53, 25 November 2022
- ...e a warning or if you want to check that you are connecting to the correct system, you can verify the key hashes using the following list: = Operating system =1 KB (229 words) - 15:34, 3 April 2024
- # The system will ask for a one-time password <code>Your OTP:</code>. Please enter your # The system will ask you for your service password <code>Password:</code>. Please enter8 KB (1,034 words) - 10:07, 23 April 2024
- ...open a command line terminal (the exact process differs on every operating system, but usually involves starting an application called '''Terminal''', '''Con If you are on a Linux or Unix system running the X Window System (X11) and want to use a GUI-based application, you can use the ''-X'' optio4 KB (546 words) - 11:27, 23 April 2024
- | [[#License|Free Software]] [https://cis-hpc.uni-konstanz.de/prod.cis/ Cluster Information System CIS]7 KB (1,076 words) - 11:15, 27 February 2024
- Compilers are complex software and have become very powerful in the last decades, to '''guide''' you as a ...ly Fortran), which are provided by the Linux distribution -- the so-called system compilers. Which however may lack certain options for optimization, for war13 KB (1,962 words) - 01:14, 9 December 2022
- Many topics depend on the cluster system you use. ...kground:#cef2e0; font-size:120%; font-weight:bold; text-align:left" | HPC System Specific Documentation4 KB (557 words) - 11:56, 23 April 2024
- ...igh-performance implementation of VNC and is installed on JUSTUS2 as the [[Software Module]] vis/tigervnc ...erver from your local computer. These instructions depend on the operating system (e.g., Linux/macOS, MS Windows) you are using and if you work with TurboVNC7 KB (1,121 words) - 18:23, 1 August 2022
- ...(Open-source Field Operation And Manipulation) is a free, open-source CFD software package with an extensive range of features to solve anything from complex ...f subdomains, in which the geometry will be decomposed, is specified in "''system/decomposeParDict''", as well as the decomposition method to use.11 KB (1,549 words) - 11:52, 14 February 2023
- ...tools, like Maestro, that acts like an interface to all other schrödinger software and it is supposed to be used for material science, to investigate the stru <big>[https://cis-hpc.uni-konstanz.de Cluster Information System CIS]</big>3 KB (369 words) - 11:44, 6 December 2022
- Name of the WebDAV site/service/software you are using 6 / Other site/service or software8 KB (1,262 words) - 14:32, 24 November 2023
- * Usage of [[BinAC2/Software|Software]] on BinAC ...available Software Modules see [https://www.bwhpc.de/software.php bwhpc.de Software Search] (select bwForCluster BinAC)2 KB (195 words) - 13:37, 5 February 2024
- ...Generate one using the Software or Hardware Token registered on the bwIDM system (see [[Registration/2FA]]) and enter it after the '''Your OTP:''' prompt.1 KB (241 words) - 10:57, 17 August 2022
- ...former bwUniCluster 1 system used the combination Moab/SLURM for the batch system queue, bwUniCluster 2.0 uses only SLURM. This means that most job scripts a ...o your job's runtime environment. This includes environment variables from software modules that were loaded at job submission time (and also $HOSTNAME variabl11 KB (1,483 words) - 23:23, 7 October 2022
- ...ntenance. During the maintenance we will again put the original $HOME file system of used file system, i.e. afterwards you will have the same data as before.878 bytes (147 words) - 23:46, 7 October 2022
- ...bwUniCluster will not be available due to a planned maintenance slot. The system will only start jobs which are expected to have completed before the mainte During the maintenance we will update the software and firmware of the file systems and cluster nodes for security reasons.582 bytes (87 words) - 23:51, 7 October 2022
- The bwForCluster Helix uses Slurm as batch system. ...bles from the submit session into the job environment and to load required software modules in the job script.9 KB (1,368 words) - 13:24, 16 October 2023
- | The primary support channel for all inquiries is the ticket system at ...e lost my 2FA device or can no longer generate One-Time Passwords using my software token.'''2 KB (279 words) - 12:14, 23 April 2024
- ...--root --rw nvidia+pytorch+21.04-py3 bash</code><br />You can now install software with root privileges, depending on the containerized Linux distribution e.g You can list all containers on the system and additional information (<code>--fancy</code> parameter) with the <code>11 KB (1,561 words) - 10:51, 11 May 2023
- * [[Helix/Software|Cluster Specific Software]] * [[Helix/Slurm|Batch System (Slurm)]]2 KB (207 words) - 18:24, 31 October 2023
- See [[Software Modules]] documentation ...to run, non-trivial compute jobs must be submitted to the cluster queuing system.4 KB (502 words) - 20:15, 23 November 2022
- ! rowspan="2" | Software ° Depending on the installed operating system (OS).4 KB (562 words) - 19:53, 16 March 2023
- Regarding software development, power efficiency correlates obviously heavily with '''computin ...y''' as possible to increase the efficiency of the scheduling of the whole system6 KB (932 words) - 13:58, 21 August 2023
- ...d are therefore available to the remote systems in clear text. If a remote system has been compromised, your password and thus your identity are compromised ...ombine a found or stolen second factor (e.g. phone or security key) with a software attack, i.e. infecting your local computer, to get hold of the secret you k6 KB (1,066 words) - 11:53, 5 December 2023
- See [[Software Modules]] documentation ...to run, non-trivial compute jobs must be submitted to the cluster queuing system.4 KB (507 words) - 11:30, 23 April 2024
- use of the software shall be properly acknowledged, e.g. in the form: Depending on the resources requested from the queueing system,4 KB (565 words) - 11:58, 23 April 2024
