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- 17:05, 7 May 2025 BinAC2/Software/Jupyterlab (hist | edit) [10,011 bytes] F Bartusch (talk | contribs) (Created page with "{{Softwarepage|devel/jupyterlab}} {| width=700px class="wikitable" |- ! Description !! Content |- | module load | devel/jupyterlab |- | License | [https://github.com/jupyterlab/jupyterlab/blob/main/LICENSE JupyterLab License] |- | Links | [https://jupyter.org/ Homepage] |- | Graphical Interface | Yes |} = Description = JupyterLab is a web-based interactive development environment for notebooks, code, and data. Currently, BinAC 2 provides the following [https://ju...")
- 20:18, 5 May 2025 NEMO2/Easybuild Modules (hist | edit) [800 bytes] M Janczyk (talk | contribs) (Created page with "EasyBuild is a software build and installation framework designed to manage scientific software on High-Performance Computing (HPC) systems. It automates the process of building and installing software, ensuring reproducibility and consistency across environments. EasyBuild uses "easyconfig" files to define build parameters, dependencies, and configurations, simplifying the management of complex software stacks. NEMO2 utilizes EasyBuild to manage its software modules. T...")
- 16:32, 23 April 2025 BinAC/Software/Cellranger (hist | edit) [1,788 bytes] F Bartusch (talk | contribs) (Created page with "{{Softwarepage|bio/cellranger}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | bio/cellranger |- | License | [https://github.com/10XGenomics/cellranger/blob/main/LICENSE Cell Ranger License] |- | Citing | [https://www.10xgenomics.com/support/software/cell-ranger/latest/miscellaneous/cr-citations How to cite Cell Ranger] |- | Links | [https://www.10xgenomics.com/support/software/cell-ranger/latest Cell Ranger Homepage] | [https://www...")
- 17:20, 16 April 2025 BinAC2/Software/Nextflow (hist | edit) [8,336 bytes] F Bartusch (talk | contribs) (Created page with "= Description = Nextflow is a scientific workflow system primarily used for bioinformatics data analysis. This documentation also introduces nf-core, a community-driven initiative that maintains a curated collection of analysis pipelines built with Nextflow. The documentation in the bwHPC Wiki serves as a getting-started guide for installing and using both Nextflow and nf-core pipelines on the bwForCluster BinAC 2. Additionally, [https://nf-co.re/pipelines/ the nf-cor...")
- 19:44, 6 April 2025 BwUniCluster 3.0 Slurm common Features (hist | edit) [0 bytes] S Braun (talk | contribs) (Created blank page)
- 09:49, 28 March 2025 BwUniCluster3.0/Login/Data Transfer (hist | edit) [3,840 bytes] S Braun (talk | contribs) (Created page with "= Data Transfer = Further alternatives for file and data exchange are available Here: Data Transfer == WebDAV == WebDAV access to the bwUniCluster-Filesystems Access via Webbrowser (read-only) Visit uc3-webdav.scc.kit.edu and login with your UC3 username and password (not the HPC service password). Here you can get an overview of your data and download single files. To be able to do more, like uploading new files, or downloading complete folders...")
- 20:29, 18 March 2025 NEMO2/Acknowledgement (hist | edit) [1,228 bytes] M Janczyk (talk | contribs) (Created page with "When preparing a publication describing work that involved the usage of a bwForCluster, e.g. the bwForCluster NEMO 2, please ensure that you reference the bwHPC initiative, the bwHPC-S5 project and – if appropriate – also the bwHPC facility itself. The following sample text is suggested as a starting point. Acknowledgement: The authors would like to thank the state of Baden-Württemberg for the support of the bwHPC and the German Research Foundation (DFG) for fu...")
- 20:06, 18 March 2025 NEMO2/Hardware (hist | edit) [5,359 bytes] M Janczyk (talk | contribs) (Created page with "== Operating System and Software == {| class="wikitable" |- !scope="column" | Operating System | [https://rockylinux.org Rocky Linux 9] (similar to RHEL 9) |- !scope="column" | Queuing System | [https://slurm.schedmd.com SLURM] (see NEMO2/Slurm for help) |- !scope="column" | (Scientific) Libraries and Software | Environment Modules |- !scope="column" | Own Software Modules using EasyBuild and Spack | [https://docs.easybuild.io/ EasyBuild] |- !scope="column" | O...")
- 19:52, 11 March 2025 NEMO2/Slurm (hist | edit) [12,075 bytes] M Janczyk (talk | contribs) (Created page with "The bwForCluster NEMO 2 uses Slurm ([https://slurm.schedmd.com/ https://slurm.schedmd.com/]) for scheduling compute jobs. = Slurm Command Overview = {| width=750px class="wikitable" ! Slurm commands !! Brief explanation |- | [https://slurm.schedmd.com/sbatch.html sbatch] || Submits a job and queues it in an input queue |- | [https://slurm.schedmd.com/salloc.html salloc] || Request resources for an interactive job |- | [https://slurm.schedmd.com/squeue.html squeue] ||...")
- 15:34, 7 March 2025 Registration/bwForCluster/NEMO1 (hist | edit) [12,182 bytes] M Janczyk (talk | contribs) (Created page with "= Registration at the bwForCluster NEMO = {|style="background:#deffee; width:100%;" |style="padding:5px; background:#cef2e0; text-align:left"| center|25px |style="padding:5px; background:#cef2e0; text-align:left"| You can return to the registration website at any time, in order to review your registration details, change/reset your service password or de-register from the service by yourself. |} NEMO still uses the old registration page https:...")
- 11:57, 7 March 2025 JUSTUS2/Software/Julia/VSCode (hist | edit) [1,869 bytes] M Carmesin (talk | contribs) (Created page with "= Setting up VS Code for interactive Julia settings")
- 15:20, 4 March 2025 NEMO2/Login (hist | edit) [6,742 bytes] M Janczyk (talk | contribs) (Created page with "{|style="background:#deffee; width:100%;" |style="padding:5px; background:#cef2e0; text-align:left"| center|25px |style="padding:5px; background:#cef2e0; text-align:left"| Access to NEMO2 is '''limited to IP addresses from the BelWü network'''. All home institutions of our current users are connected to BelWü, so if you are on your campus network (e.g. in your office or on the campus WiFi) you should be able to connect to NEMO2 without restricti...")
- 20:40, 3 March 2025 NEMO2/Migrate NEMO1 workspaces to NEMO2 workspaces (hist | edit) [5,542 bytes] M Janczyk (talk | contribs) (Created page with "You can migrate your NEMO1 workspace to NEMO2 using <code>rsync</code> or the <code>migratenemo1ws</code> script. Login to NEMO2 (after registration): <pre> ssh -l <username> nemo2-login.nemo.uni-freiburg.de </pre> == Using migratenemo1ws to migrate workspaces == You can migrate your NEMO1 workspace to NEMO2 using the <code>migratenemo1ws</code> script. It will migrate your NEMO1 workspace to NEMO2 using <code>rsync</code> with predefined options<code>-a -h -x -z -P -...") originally created as "Migrate NEMO1 workspaces to NEMO2 workspaces"
- 15:02, 3 March 2025 NEMO2/Support (hist | edit) [2,455 bytes] M Janczyk (talk | contribs) (Created page with "= NEMO Support = {|style="background:#deffee; width:100%;" |style="padding:5px; background:#cef2e0; text-align:left"| center|25px |style="padding:5px; background:#cef2e0; text-align:left"| This support information is for all researchers in the state of Baden-Württemberg who (want to) use the bwForCluster NEMO 2. |} == What to do first == Please search the relevant information on the web pages first: * See general support...")
- 15:00, 3 March 2025 NEMO2/Start (hist | edit) [1,055 bytes] M Janczyk (talk | contribs) (Created page with "== Get access to the cluster == Follow the registration process for a bwForCluster. -> bwForCluster Registration == Login to the cluster == Login to the cluster. -> Login == Transfer your data to the cluster == Get familiar with available file systems on the cluster. -> File Systems <!--Transfer your data to the cluster using appropriate tools. -> ... -...")
- 14:45, 3 March 2025 NEMO2 (hist | edit) [2,461 bytes] M Janczyk (talk | contribs) (Created page with "center|600px The '''bwForCluster NEMO''' is dedicated to research in the bwHPC domains Neuroscience, Elementary Particle Physics, Microsystems Engineering and Material Science (NEMO). <!-- {| style=" background:#ffa833; width:100%;" | style="padding:8px; background:#f80; font-size:120%; font-weight:bold; text-align:left" | Maintenance |- | <strong>[https://www.nemo.uni-freiburg.de/nemo/stat/ Scheduled Power Maintenance 09.04.2024]</strong> |} -->...") originally created as "NEMO"
- 18:18, 26 February 2025 Helix/ChangeLog (hist | edit) [585 bytes] S Richling (talk | contribs) (Created page with "= 2024-10-01 Maintenance =")
- 11:57, 26 February 2025 BwUniCluster3.0/Login/Client (hist | edit) [5,573 bytes] S Braun (talk | contribs) (Created page with "neuer Client")
- 10:25, 25 February 2025 Development/VS Code (hist | edit) [14,654 bytes] S Braun (talk | contribs) (Created page with "# Visual Studio Code Visual Studio Code (VS Code) is an open source source-code editor from Microsoft[^1]. It has become one of the most popular IDEs[^2]. The functionality of VS Code can easily be extended by installing extensions. These extensions allow for almost arbitrary **language support**, **debugging** or **remote development**. You can install VS Code locally on Windows, macOS and Linux. <figure markdown> {: style="width: 100...")
- 11:39, 19 February 2025 Infiniband (hist | edit) [1,105 bytes] K Siegmund (talk | contribs) (Created page with "'''Infiniband''' and '''Omni-Path'' are a high-speed Network often used in HPC systems for their low latency. The name comes from "infinite bandwidth", because you can connect several cables to the same machine, up to a theoretical infinite bandwidth. '''Infiniband''' is the original network distributed by Melanox (now part of Nvidia). '''Omni-Path''' or '''OPA''' is about the same technology originally created by Intel, but now sold by a separate company Cornelis Net...")
- 14:50, 11 February 2025 Development/ollama (hist | edit) [6,435 bytes] R Keller (talk | contribs) (Introduction to Ollama)
