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- 13:52, 21 July 2025 Registration/Cluster (hist | edit) [450 bytes] M Janczyk (talk | contribs) (Created page with "= Cluster Registration (Account Creation) = To finish the registration procedure select the cluster your RV was assigned to: * '''bwUniCluster 3.0''' * '''bwForCluster BinAC 2''' * '''bwForCluster JUSTUS 2''' * '''bwForCluster Helix''' * '''bwForCluster NEMO 2'''")
- 17:37, 16 July 2025 BwUniCluster3.0/Software/R (hist | edit) [4,476 bytes] K Kuck (talk | contribs) (Created page with "{{Softwarepage|math/R}} {| width=600px class="wikitable" |- ! Description !! Content |- | module load | math/R |- | License | GPL |- | Citing | n/a |- | Links | [http://www.r-project.org/ Homepage] | [http://cran.r-project.org/manuals.html Documentation] |- | Graphical Interface | No |- | Plugins | User dependent |} = Description = '''R''' is a free and open-source statistical programming environment based on S, developed at Bell Laboratories (formerly AT&T, now...")
- 17:12, 16 July 2025 Registration/Account (hist | edit) [1,058 bytes] M Janczyk (talk | contribs) (Created page with "If you have trouble login to your account, on the cluster, you can try the following to verify your account: 1. Select the cluster you want to check your account and select your home organization: <br /> → [https://login.bwidm.de '''bwUniCluster 3.0'''] <br /> → [https://bwservices.uni-tuebingen.de '''BINAC'''] <br /> → [https://login.bwidm.de '''JUSTUS 2'''] <br /> → [https://bwservices.uni-heidelberg.de '''Helix'''] <br /> → [https://login.bwi...")
- 16:46, 16 July 2025 NEMO2/FAQ (hist | edit) [907 bytes] M Janczyk (talk | contribs) (Created page with "__TOC__ === Q: I am having problems logging in to the cluster: === ==== A: What you can do: ==== * Double-check your username and password. * Make sure your CAPS LOCK key is not enabled. * Try resetting your password if you have forgotten it. * Ensure your account is not locked or expired. * Try logging in from a different device or browser. * Are you within the...")
- 10:20, 15 July 2025 BwUniCluster3.0/Software/R/Rjags (hist | edit) [3,182 bytes] K Kuck (talk | contribs) (Created page with "= General information = rjags is an R interface to use JAGS, [https://mcmc-jags.sourceforge.io/ Just another Gibbs Sampler], a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation = Installation instructions = <code>rjags</code> needs a working JAGS installation. The following instructions will build and install JAGS 4.3.2 to <code>$JAGS_HOME</code> on bwUniCluster 3.0. First, in order to compile them on a compute node,...")
- 14:32, 10 July 2025 Development/R (hist | edit) [7,692 bytes] S Braun (talk | contribs) (Created page with "= Description = '''R''' is a language and environment for statistical computing and graphics. It is a GNU project which is similar to the S language and environment which was developed at Bell Laboratories (formerly AT&T, now Lucent Technologies) by John Chambers and colleagues. R can be considered as a different implementation of S. There are some important differences, but much code written for S runs unaltered under R. R provides a wide variety of statistical (linea...")
- 09:49, 9 July 2025 JUSTUS2/Software/Python (hist | edit) [2,622 bytes] M Carmesin (talk | contribs) (Created page with "This page covers information on Python specific to JUSTUS2. For general information valid on all clusters see Development/Python. =Recommendations= * Don't use conda (see below) * Don't use the system python for computation intensive work * Use optimized numerical libraries (SciPy, NumPy) provided as environment modules * Use virtual environments (venv) * Use pip for in...")
- 15:56, 2 July 2025 DACHS/Acknowledgement (hist | edit) [541 bytes] R Keller (talk | contribs) (Citation of Cluster in publications)
- 18:05, 24 June 2025 BinAC2/Migrate BinAC 1 workspaces to BinAC 2 workspaces (hist | edit) [5,780 bytes] F Bartusch (talk | contribs) (Created page with "<!-- {|style="background:#ffa833; width:100%;" |style="padding:5px; background:##ffa833; text-align:left"| center|25px |style="padding:5px; background:#ffa833; text-align:left"| BinAC 2 workspaces are currently limited to 5 TB per workspace. Larger workspaces should be split up first. |} --> __TOC__ = Preamble = == Remove unnecessary data == Now is a good possibility getting rid of unnecessary data. Don't migrate data to BinAC 2 that you know...")
- 12:19, 24 June 2025 BinAC2/Migrate Moab to Slurm jobs (hist | edit) [6,041 bytes] F Bartusch (talk | contribs) (Created page with "== BinAC 1 Queues -> BinAC 2 Slurm partitions == BinAC 2 uses Slurm scheduler instead of Moab/Torque. Please refer to the BinAC 2 Slurm paritions page for an overview of available Slurm partitions. == Moab/Torque flags -> Slurm flags == Replace Moab/Torque job specification flags in your job scripts by their corresponding Slurm counterparts. '''Commonly used Moab job specification flags and their Slurm equivalents''' {| width=750px class=...")
- 11:40, 24 June 2025 Registration/bwForCluster/BinAC2 (hist | edit) [4,303 bytes] F Bartusch (talk | contribs) (Add BinAC 2 registration page)
- 10:20, 17 June 2025 Registration/bwForCluster/RV/Management (hist | edit) [3,343 bytes] H Schumacher (talk | contribs) (new page)
- 21:34, 5 June 2025 Helix/bwVisu/CryoSPARC (hist | edit) [2,111 bytes] S Richling (talk | contribs) (Created page with "CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines.") originally created as "Helix/bwVisu/Cryosparc"
- 12:48, 20 May 2025 BinAC2/Acknowledgement (hist | edit) [1,289 bytes] S Behnle (talk | contribs) (Added Acknowledgement Page for BinAC2)
- 16:27, 14 May 2025 NEMO2/Migrate Moab to Slurm jobs (hist | edit) [5,721 bytes] M Janczyk (talk | contribs) (Created page with "{|style="background:#deffee; width:100%;" |style="padding:5px; background:#cef2e0; text-align:left"| center|25px |style="padding:5px; background:#cef2e0; text-align:left"| By default Moab does not export any environment variables to the job's runtime environment. With Slurm most of the login environment variables are exported to your job's runtime environment. This includes environment variables from software modules that were loaded at job submis...")
- 12:25, 12 May 2025 Development/Julia (hist | edit) [3,287 bytes] M Carmesin (talk | contribs) (Created page with "Julia is a high-level, high-performance, dynamic programming language, being designed with scientific computing in mind. Parallel programming features, such as multi-threading are included in the core language, while there also exist packages leveraging the power of MPI and CUDA. There are no packages preinstalled besides the Julia language core, please use the Julia package manager to install any required Julia package. The Julia module on Justus loads suitable versio...")
- 17:05, 7 May 2025 BinAC2/Software/Jupyterlab (hist | edit) [10,011 bytes] F Bartusch (talk | contribs) (Created page with "{{Softwarepage|devel/jupyterlab}} {| width=700px class="wikitable" |- ! Description !! Content |- | module load | devel/jupyterlab |- | License | [https://github.com/jupyterlab/jupyterlab/blob/main/LICENSE JupyterLab License] |- | Links | [https://jupyter.org/ Homepage] |- | Graphical Interface | Yes |} = Description = JupyterLab is a web-based interactive development environment for notebooks, code, and data. Currently, BinAC 2 provides the following [https://ju...")
